Dr. Charles N. Alpers is a Research Chemist with the U.S. Geological Survey’s California Water Science Center in Sacramento, California. He has degrees in Geology from Harvard University (A.B., 1980) and the University of California, Berkeley (Ph.D., 1986). Dr. Alpers has authored or coauthored more than 120 peer-reviewed publications on various topics related to the environmental legacy of historical mining, including acid mine drainage, sulfate minerals, mercury contamination and bioaccumulation, and arsenic speciation and bioavailability. His current projects include quantification of erosion and sediment sources at Malakoff Diggins State Historic Park in Nevada County, California; investigation of mercury transport, methylation, and bioaccumulation at the Cache Creek Settling Basin in Yolo County, California; and geochemistry and mineralogy related to extreme mine drainage (including negative pH) at the Iron Mountain Mine Superfund Site in Shasta County, California.
High-resolution ground-based light detection and ranging (lidar), also known as terrestrial laser... more High-resolution ground-based light detection and ranging (lidar), also known as terrestrial laser scanning, was used to quantify the volume of mercury-contaminated sediment eroded from a stream cutbank at Stocking Flat along Deer Creek in the Sierra Nevada foothills, about 3 kilometers west of Nevada City, California. Terrestrial laser scanning was used to collect sub-centimeter, three-dimensional images of the complex cutbank surface, which could not be mapped non-destructively or in sufficient detail with traditional surveying techniques. The stream cutbank, which is approximately 50 meters long and 8 meters high, was surveyed on four occasions: December 1, 2010; January 20, 2011; May 12, 2011; and February 4, 2013. Volumetric changes were determined between the sequential, three-dimensional lidar surveys. Volume was calculated by two methods, and the average value is reported. Between the first and second surveys (December 1, 2010, to January 20, 2011), a volume of 143 plus or minus 15 cubic meters of sediment was eroded from the cutbank and mobilized by Deer Creek. Between the second and third surveys (January 20, 2011, to May 12, 2011), a volume of 207 plus or minus 24 cubic meters of sediment was eroded from the cutbank and mobilized by the stream. Total volumetric change during the winter and spring of 2010–11 was 350 plus or minus 28 cubic meters. Between the third and fourth surveys (May 12, 2011, to February 4, 2013), the differencing of the three-dimensional lidar data indicated that a volume of 18 plus or minus 10 cubic meters of sediment was eroded from the cutbank. The total volume of sediment eroded from the cutbank between the first and fourth surveys was 368 plus or minus 30 cubic meters.
The seasonal and spatial variability of water quality, including mercury species, was evaluated i... more The seasonal and spatial variability of water quality, including mercury species, was evaluated in agricultural and managed, non-agricultural wetlands in the Yolo Bypass Wildlife Area, an area managed for multiple beneficial uses including bird habitat and rice farming. The study was conducted during an 11-month period (June 2007 to April 2008) that included a summer growing season and flooded conditions during winter. Methylmercury (MeHg) concentrations in surface water varied over a wide range (0.1 to 37 ng L −1 unfiltered; 0.04 to 7.3 ng L −1 filtered). Maximum MeHg values are among the highest ever recorded in wetlands. Highest MeHg concentrations in unfiltered surface water were observed in drainage from wild rice fields during harvest (September 2007), and in white rice fields with decomposing rice straw during regional flooding (February 2008). The ratio of MeHg to total mercury (MeHg/THg) increased about 20-fold in both unfiltered and filtered water during the growing season (June to August 2007) in the white and wild rice fields, and about 5-fold in fallow fields (July to August 2007), while there was little to no change in MeHg/THg in the permanent wetland. Sulfate-bearing fertilizer had no effect on Hg(II) methylation, as sulfate-reducing bacteria were not sulfate-limited in these agricultural wetlands. Concentrations of MeHg in filtered and unfiltered water correlated with filtered Fe, filtered Mn, DOC, and two indicators of sulfate reduction: the SO 4 2− /Cl − ratio, and δ 34 S in aqueous sul-fate. These relationships suggest that microbial reduction of SO 4 2− , Fe(III), and possibly Mn(IV) may contribute to net Hg(II)-methylation in this setting.
Marshes in the Sacramento-San Joaquin Delta, the most landward extent of the San Francisco Estuar... more Marshes in the Sacramento-San Joaquin Delta, the most landward extent of the San Francisco Estuary, started forming around ~6,700 years ago. Currently, Delta marshes are classified as tidal freshwater, however it is unknown to what degree the salinity regime has varied between brackish and fresh conditions since marsh development. This information is important to managers considering major changes to the flow regime in the Delta, because such changes could impact the future sustainability of endangered species such as the Delta smelt (Hypomesus transpacificus), which live in or just upstream of the mixing zone between fresh and brackish water. The main goal of the Rates and Evolution of PEat Accretion through Time project (REPEAT II) is to reconstruct paleosalinity regimes in the Delta. We are using elemental concentrations of Na, Ca, K, and Mg (the major cations in ocean water) in peat profiles to develop a quantitative index of salinity for the past 6000+ years. We are normalizing...
... ULRICH PETERSEN, Department of Earth and Planetary Sciences, Harvard University, 310 Hoffman ... more ... ULRICH PETERSEN, Department of Earth and Planetary Sciences, Harvard University, 310 Hoffman Laboratory, 20 Oxford Street, Cambridge, Massachusetts 02138 THOMAS J. SHEPHERD, British Geological Survey, Keyworth, Nottingham NG12 5GG, United Kingdom ...
ABSTRACT The effect of heavy metals from the Iron Mountain Mines (IMM) Superfund site on the uppe... more ABSTRACT The effect of heavy metals from the Iron Mountain Mines (IMM) Superfund site on the upper Sacramento River is examined using data from water and bed sediment samples collected during 1996–97. Relative to surrounding waters, aluminum, cadmium, cobalt, copper, iron, lead, manganese, thallium, zinc and the rare-earth elements (REE) were all present in high concentrations in effluent from Spring Creek Reservoir (SCR), which enters into the Sacramento River in the Spring Creek Arm of Keswick Reservoir. SCR was constructed in part to regulate the flow of acidic, metal-rich waters draining the IMM Superfund site. Although virtually all of these metals exist in SCR in the dissolved form, upon entering Keswick Reservoir they at least partially converted via precipitation and/or adsorption to the particulate phase. In spite of this, few of the metals settled out; instead the vast majority was transported colloidally down the Sacramento River at least to Bend Bridge, 67 km from Keswick Dam.The geochemical influence of IMM on the upper Sacramento River was variable, chiefly dependent on the flow of Spring Creek. Although the average flow of the Sacramento River at Keswick Dam is 250 m3/s (cubic meters per second), even flows as low as 0.3 m3/s from Spring Creek were sufficient to account for more than 15% of the metals loading at Bend Bridge, and these proportions increased with increasing Spring Creek flow.The dissolved proportion of the total bioavailable load was dependent on the element but steadily decreased for all metals, from near 100% in Spring Creek to values (for some elements) of less than 1% at Bend Bridge; failure to account for the suspended sediment load in assessments of the effect of metals transport in the Sacramento River can result in estimates which are low by as much as a factor of 100.
... Authors: Marvin-Dipasquale, MC; Windham-Myers, L.; Alpers, CN; Agee, JL; Cox, MH; Kakouros, E... more ... Authors: Marvin-Dipasquale, MC; Windham-Myers, L.; Alpers, CN; Agee, JL; Cox, MH; Kakouros, E.; Wren, SL. ... YBWA) is part of the larger Yolo Bypass floodwater protection zone associated with the Sacramento River and the Sacramento&150;San Joaquin Delta, California. ...
Base-metal slag deposits at the Penn Mine in Calaveras County, California, are a source of enviro... more Base-metal slag deposits at the Penn Mine in Calaveras County, California, are a source of environmental contamination through leaching of potentially toxic elements. Historical Cu smelting at Penn Mine (1865–1919) generated approximately 200,000 m3 of slag. The slag deposits, which are flooded annually by a reservoir used for drinking water and irrigation, also may be in contact with acidic ground
Concentrations and loads of total mercury and methylmercury were measured in streams draining aba... more Concentrations and loads of total mercury and methylmercury were measured in streams draining abandoned mercury mines and in the proximity of geothermal discharge in the Cache Creek watershed of California during a 17-month period from January 2000 through May 2001. Rainfall and runoff were lower than long-term averages during the study period. The greatest loading of mercury and methylmercury from upstream sources to downstream receiving waters, such as San Francisco Bay, generally occurred during or after winter rainfall events. During the study period, loads of mercury and methylmercury from geothermal sources tended to be greater than those from abandoned mining areas, a pattern attributable to the lack of large precipitation events capable of mobilizing significant amounts of either mercury-laden sediment or dissolved mercury and methylmercury from mine waste. Streambed sediments of Cache Creek are a significant source of mercury and methylmercury to downstream receiving bodies of water. Much of the mercury in these sediments is the result of deposition over the last 100–150 years by either storm-water runoff, from abandoned mines, or continuous discharges from geothermal areas. Several geochemical constituents were useful as natural tracers for mining and geothermal areas, including the aqueous concentrations of boron, chloride, lithium and sulfate, and the stable isotopes of hydrogen and oxygen in water. Stable isotopes of water in areas draining geothermal discharges showed a distinct trend toward enrichment of 18O compared with meteoric waters, whereas much of the runoff from abandoned mines indicated a stable isotopic pattern more consistent with local meteoric water.
Environmental pollution (Barking, Essex : 1987), Jan 1, 2006
Seasonal and spatial variations in metal concentrations and pH were found in a stream at a restor... more Seasonal and spatial variations in metal concentrations and pH were found in a stream at a restored copper mine site located near a massive sulfide deposit in the Foothill copper-zinc belt of the Sierra Nevada, California. At the mouth of the stream, copper concentrations increased and pH decreased with increased streamflow after the onset of winter rain and, unexpectedly, reached extreme values 1 or 2 months after peaks in the seasonal hydrographs. In contrast, aqueous zinc and sulfate concentrations were highest during low-flow periods. Spatial variation was assessed in 400 m of reach encompassing an acidic, metal-laden seep. At this seep, pH remained low (2−3) throughout the year, and copper concentrations were highest. In contrast, the zinc concentrations increased with downstream distance. These spatial patterns were caused by immobilization of copper by hydrous ferric oxides in benthic sediments, coupled with increasing downstream supply of zinc from groundwater seepage.
Environmental monitoring and assessment, Jan 1, 2010
This study examined mercury concentrations in whole fish from Camp Far West Reservoir, an 830-ha ... more This study examined mercury concentrations in whole fish from Camp Far West Reservoir, an 830-ha reservoir in northern California, USA, located downstream from lands mined for gold during and following the Gold Rush of 1848–1864. Total mercury (reported as dry weight concentrations) was highest in spotted bass (mean, 0.93 μg/g; range, 0.16–4.41 μg/g) and lower in bluegill (mean, 0.45 μg/g; range, 0.22–1.96 μg/g) and threadfin shad (0.44 μg/g; range, 0.21–1.34 μg/g). Spatial patterns for mercury in fish indicated high concentrations upstream in the Bear River arm and generally lower concentrations elsewhere, including downstream near the dam. These findings coincided with patterns exhibited by methylmercury in water and sediment, and suggested that mercury-laden inflows from the Bear River were largely responsible for contaminating the reservoir ecosystem. Maximum concentrations of mercury in all three fish species, but especially bass, were high enough to warrant concern about toxic effects in fish and consumers of fish.
High-resolution ground-based light detection and ranging (lidar), also known as terrestrial laser... more High-resolution ground-based light detection and ranging (lidar), also known as terrestrial laser scanning, was used to quantify the volume of mercury-contaminated sediment eroded from a stream cutbank at Stocking Flat along Deer Creek in the Sierra Nevada foothills, about 3 kilometers west of Nevada City, California. Terrestrial laser scanning was used to collect sub-centimeter, three-dimensional images of the complex cutbank surface, which could not be mapped non-destructively or in sufficient detail with traditional surveying techniques. The stream cutbank, which is approximately 50 meters long and 8 meters high, was surveyed on four occasions: December 1, 2010; January 20, 2011; May 12, 2011; and February 4, 2013. Volumetric changes were determined between the sequential, three-dimensional lidar surveys. Volume was calculated by two methods, and the average value is reported. Between the first and second surveys (December 1, 2010, to January 20, 2011), a volume of 143 plus or minus 15 cubic meters of sediment was eroded from the cutbank and mobilized by Deer Creek. Between the second and third surveys (January 20, 2011, to May 12, 2011), a volume of 207 plus or minus 24 cubic meters of sediment was eroded from the cutbank and mobilized by the stream. Total volumetric change during the winter and spring of 2010–11 was 350 plus or minus 28 cubic meters. Between the third and fourth surveys (May 12, 2011, to February 4, 2013), the differencing of the three-dimensional lidar data indicated that a volume of 18 plus or minus 10 cubic meters of sediment was eroded from the cutbank. The total volume of sediment eroded from the cutbank between the first and fourth surveys was 368 plus or minus 30 cubic meters.
The seasonal and spatial variability of water quality, including mercury species, was evaluated i... more The seasonal and spatial variability of water quality, including mercury species, was evaluated in agricultural and managed, non-agricultural wetlands in the Yolo Bypass Wildlife Area, an area managed for multiple beneficial uses including bird habitat and rice farming. The study was conducted during an 11-month period (June 2007 to April 2008) that included a summer growing season and flooded conditions during winter. Methylmercury (MeHg) concentrations in surface water varied over a wide range (0.1 to 37 ng L −1 unfiltered; 0.04 to 7.3 ng L −1 filtered). Maximum MeHg values are among the highest ever recorded in wetlands. Highest MeHg concentrations in unfiltered surface water were observed in drainage from wild rice fields during harvest (September 2007), and in white rice fields with decomposing rice straw during regional flooding (February 2008). The ratio of MeHg to total mercury (MeHg/THg) increased about 20-fold in both unfiltered and filtered water during the growing season (June to August 2007) in the white and wild rice fields, and about 5-fold in fallow fields (July to August 2007), while there was little to no change in MeHg/THg in the permanent wetland. Sulfate-bearing fertilizer had no effect on Hg(II) methylation, as sulfate-reducing bacteria were not sulfate-limited in these agricultural wetlands. Concentrations of MeHg in filtered and unfiltered water correlated with filtered Fe, filtered Mn, DOC, and two indicators of sulfate reduction: the SO 4 2− /Cl − ratio, and δ 34 S in aqueous sul-fate. These relationships suggest that microbial reduction of SO 4 2− , Fe(III), and possibly Mn(IV) may contribute to net Hg(II)-methylation in this setting.
Marshes in the Sacramento-San Joaquin Delta, the most landward extent of the San Francisco Estuar... more Marshes in the Sacramento-San Joaquin Delta, the most landward extent of the San Francisco Estuary, started forming around ~6,700 years ago. Currently, Delta marshes are classified as tidal freshwater, however it is unknown to what degree the salinity regime has varied between brackish and fresh conditions since marsh development. This information is important to managers considering major changes to the flow regime in the Delta, because such changes could impact the future sustainability of endangered species such as the Delta smelt (Hypomesus transpacificus), which live in or just upstream of the mixing zone between fresh and brackish water. The main goal of the Rates and Evolution of PEat Accretion through Time project (REPEAT II) is to reconstruct paleosalinity regimes in the Delta. We are using elemental concentrations of Na, Ca, K, and Mg (the major cations in ocean water) in peat profiles to develop a quantitative index of salinity for the past 6000+ years. We are normalizing...
... ULRICH PETERSEN, Department of Earth and Planetary Sciences, Harvard University, 310 Hoffman ... more ... ULRICH PETERSEN, Department of Earth and Planetary Sciences, Harvard University, 310 Hoffman Laboratory, 20 Oxford Street, Cambridge, Massachusetts 02138 THOMAS J. SHEPHERD, British Geological Survey, Keyworth, Nottingham NG12 5GG, United Kingdom ...
ABSTRACT The effect of heavy metals from the Iron Mountain Mines (IMM) Superfund site on the uppe... more ABSTRACT The effect of heavy metals from the Iron Mountain Mines (IMM) Superfund site on the upper Sacramento River is examined using data from water and bed sediment samples collected during 1996–97. Relative to surrounding waters, aluminum, cadmium, cobalt, copper, iron, lead, manganese, thallium, zinc and the rare-earth elements (REE) were all present in high concentrations in effluent from Spring Creek Reservoir (SCR), which enters into the Sacramento River in the Spring Creek Arm of Keswick Reservoir. SCR was constructed in part to regulate the flow of acidic, metal-rich waters draining the IMM Superfund site. Although virtually all of these metals exist in SCR in the dissolved form, upon entering Keswick Reservoir they at least partially converted via precipitation and/or adsorption to the particulate phase. In spite of this, few of the metals settled out; instead the vast majority was transported colloidally down the Sacramento River at least to Bend Bridge, 67 km from Keswick Dam.The geochemical influence of IMM on the upper Sacramento River was variable, chiefly dependent on the flow of Spring Creek. Although the average flow of the Sacramento River at Keswick Dam is 250 m3/s (cubic meters per second), even flows as low as 0.3 m3/s from Spring Creek were sufficient to account for more than 15% of the metals loading at Bend Bridge, and these proportions increased with increasing Spring Creek flow.The dissolved proportion of the total bioavailable load was dependent on the element but steadily decreased for all metals, from near 100% in Spring Creek to values (for some elements) of less than 1% at Bend Bridge; failure to account for the suspended sediment load in assessments of the effect of metals transport in the Sacramento River can result in estimates which are low by as much as a factor of 100.
... Authors: Marvin-Dipasquale, MC; Windham-Myers, L.; Alpers, CN; Agee, JL; Cox, MH; Kakouros, E... more ... Authors: Marvin-Dipasquale, MC; Windham-Myers, L.; Alpers, CN; Agee, JL; Cox, MH; Kakouros, E.; Wren, SL. ... YBWA) is part of the larger Yolo Bypass floodwater protection zone associated with the Sacramento River and the Sacramento&150;San Joaquin Delta, California. ...
Base-metal slag deposits at the Penn Mine in Calaveras County, California, are a source of enviro... more Base-metal slag deposits at the Penn Mine in Calaveras County, California, are a source of environmental contamination through leaching of potentially toxic elements. Historical Cu smelting at Penn Mine (1865–1919) generated approximately 200,000 m3 of slag. The slag deposits, which are flooded annually by a reservoir used for drinking water and irrigation, also may be in contact with acidic ground
Concentrations and loads of total mercury and methylmercury were measured in streams draining aba... more Concentrations and loads of total mercury and methylmercury were measured in streams draining abandoned mercury mines and in the proximity of geothermal discharge in the Cache Creek watershed of California during a 17-month period from January 2000 through May 2001. Rainfall and runoff were lower than long-term averages during the study period. The greatest loading of mercury and methylmercury from upstream sources to downstream receiving waters, such as San Francisco Bay, generally occurred during or after winter rainfall events. During the study period, loads of mercury and methylmercury from geothermal sources tended to be greater than those from abandoned mining areas, a pattern attributable to the lack of large precipitation events capable of mobilizing significant amounts of either mercury-laden sediment or dissolved mercury and methylmercury from mine waste. Streambed sediments of Cache Creek are a significant source of mercury and methylmercury to downstream receiving bodies of water. Much of the mercury in these sediments is the result of deposition over the last 100–150 years by either storm-water runoff, from abandoned mines, or continuous discharges from geothermal areas. Several geochemical constituents were useful as natural tracers for mining and geothermal areas, including the aqueous concentrations of boron, chloride, lithium and sulfate, and the stable isotopes of hydrogen and oxygen in water. Stable isotopes of water in areas draining geothermal discharges showed a distinct trend toward enrichment of 18O compared with meteoric waters, whereas much of the runoff from abandoned mines indicated a stable isotopic pattern more consistent with local meteoric water.
Environmental pollution (Barking, Essex : 1987), Jan 1, 2006
Seasonal and spatial variations in metal concentrations and pH were found in a stream at a restor... more Seasonal and spatial variations in metal concentrations and pH were found in a stream at a restored copper mine site located near a massive sulfide deposit in the Foothill copper-zinc belt of the Sierra Nevada, California. At the mouth of the stream, copper concentrations increased and pH decreased with increased streamflow after the onset of winter rain and, unexpectedly, reached extreme values 1 or 2 months after peaks in the seasonal hydrographs. In contrast, aqueous zinc and sulfate concentrations were highest during low-flow periods. Spatial variation was assessed in 400 m of reach encompassing an acidic, metal-laden seep. At this seep, pH remained low (2−3) throughout the year, and copper concentrations were highest. In contrast, the zinc concentrations increased with downstream distance. These spatial patterns were caused by immobilization of copper by hydrous ferric oxides in benthic sediments, coupled with increasing downstream supply of zinc from groundwater seepage.
Environmental monitoring and assessment, Jan 1, 2010
This study examined mercury concentrations in whole fish from Camp Far West Reservoir, an 830-ha ... more This study examined mercury concentrations in whole fish from Camp Far West Reservoir, an 830-ha reservoir in northern California, USA, located downstream from lands mined for gold during and following the Gold Rush of 1848–1864. Total mercury (reported as dry weight concentrations) was highest in spotted bass (mean, 0.93 μg/g; range, 0.16–4.41 μg/g) and lower in bluegill (mean, 0.45 μg/g; range, 0.22–1.96 μg/g) and threadfin shad (0.44 μg/g; range, 0.21–1.34 μg/g). Spatial patterns for mercury in fish indicated high concentrations upstream in the Bear River arm and generally lower concentrations elsewhere, including downstream near the dam. These findings coincided with patterns exhibited by methylmercury in water and sediment, and suggested that mercury-laden inflows from the Bear River were largely responsible for contaminating the reservoir ecosystem. Maximum concentrations of mercury in all three fish species, but especially bass, were high enough to warrant concern about toxic effects in fish and consumers of fish.
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The stream cutbank, which is approximately 50 meters long and 8 meters high, was surveyed on four occasions: December 1, 2010; January 20, 2011; May 12, 2011; and February 4, 2013. Volumetric changes were determined between the sequential, three-dimensional lidar surveys. Volume was calculated by two methods, and the average value is reported. Between the first and second surveys (December 1, 2010, to January 20, 2011), a volume of 143 plus or minus 15 cubic meters of sediment was eroded from the cutbank and mobilized by Deer Creek. Between the second and third surveys (January 20, 2011, to May 12, 2011), a volume of 207 plus or minus 24 cubic meters of sediment was eroded from the cutbank and mobilized by the stream. Total volumetric change during the winter and spring of 2010–11 was 350 plus or minus 28 cubic meters. Between the third and fourth surveys (May 12, 2011, to February 4, 2013), the differencing of the three-dimensional lidar data indicated that a volume of 18 plus or minus 10 cubic meters of sediment was eroded from the cutbank. The total volume of sediment eroded from the cutbank between the first and fourth surveys was 368 plus or minus 30 cubic meters.
The stream cutbank, which is approximately 50 meters long and 8 meters high, was surveyed on four occasions: December 1, 2010; January 20, 2011; May 12, 2011; and February 4, 2013. Volumetric changes were determined between the sequential, three-dimensional lidar surveys. Volume was calculated by two methods, and the average value is reported. Between the first and second surveys (December 1, 2010, to January 20, 2011), a volume of 143 plus or minus 15 cubic meters of sediment was eroded from the cutbank and mobilized by Deer Creek. Between the second and third surveys (January 20, 2011, to May 12, 2011), a volume of 207 plus or minus 24 cubic meters of sediment was eroded from the cutbank and mobilized by the stream. Total volumetric change during the winter and spring of 2010–11 was 350 plus or minus 28 cubic meters. Between the third and fourth surveys (May 12, 2011, to February 4, 2013), the differencing of the three-dimensional lidar data indicated that a volume of 18 plus or minus 10 cubic meters of sediment was eroded from the cutbank. The total volume of sediment eroded from the cutbank between the first and fourth surveys was 368 plus or minus 30 cubic meters.