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ORCID9. RECOMB 2005: Cambridge, MA, USA
- Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman:
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings. Lecture Notes in Computer Science 3500, Springer 2005, ISBN 3-540-25866-3 - Jacob Scott, Trey Ideker
, Richard M. Karp, Roded Sharan:
Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. 1-13 - Ariel Jaimovich, Gal Elidan, Hanah Margalit, Nir Friedman:
Towards an Integrated Protein-Protein Interaction Network. 14-30 - Irit Gat-Viks, Amos Tanay, Daniela Raijman, Ron Shamir:
The Factor Graph Network Model for Biological Systems. 31-47 - Mehmet Koyutürk, Ananth Grama, Wojciech Szpankowski:
Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution. 48-65 - Brendan J. Frey, Quaid Morris, Mark D. Robinson, Timothy R. Hughes:
Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model. 66-82 - Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini:
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis. 83-100 - Dmitri A. Papatsenko, Mike Levine:
A Regulatory Network Controlling Drosophila Development. 101-101 - Susan Lindquist, Ernest Fraenkel, Tiago Outeiro, Aaron Gitler, Julie Su, Anil Cashikar, Smitha Jagadish:
Yeast Cells as a Discovery Platform for Neurodegenerative Disease. 102-102 - Kuen-Pin Wu, Jia-Ming Chang, Jun-Bo Chen, Chi-Fon Chang, Wen-Jin Wu, Tai-Huang Huang, Ting-Yi Sung, Wen-Lian Hsu:
RIBRA-An Error-Tolerant Algorithm for the NMR Backbone Assignment Problem. 103-117 - Marshall W. Bern, Jindong Chen, Hao Chi Wong:
Avoiding Local Optima in Single Particle Reconstruction. 118-132 - Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini:
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions. 133-151 - Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang:
RNA-RNA Interaction Prediction and Antisense RNA Target Search. 152-171 - Vineet Bafna, Haixu Tang, Shaojie Zhang:
Consensus Folding of Unaligned RNA Sequences Revisited. 172-187 - Charles DeLisi:
Discovery and Annotation of Genetic Modules. 188-188 - Kim R. Rasmussen, Jens Stoye, Eugene W. Myers:
Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length. 189-203 - Sing-Hoi Sze, Yue Lu, Qingwu Yang:
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment. 204-216 - Dan Gusfield, Vikas Bansal:
A Fundamental Decomposition Theory for Phylogenetic Networks and Incompatible Characters. 217-232 - Daniel H. Huson, Tobias H. Klöpper, Peter J. Lockhart, Mike A. Steel:
Reconstruction of Reticulate Networks from Gene Trees. 233-249 - Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot:
A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. 250-264 - Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguyen, Wing-Kin Sung:
Constructing a Smallest Refining Galled Phylogenetic Network. 265-280 - Wolfgang Baumeister:
Mapping Molecular Landscapes Inside Cells. 281-282 - David Burstein, Igor Ulitsky, Tamir Tuller, Benny Chor:
Information Theoretic Approaches to Whole Genome Phylogenies. 283-295 - Benny Chor, Tamir Tuller:
Maximum Likelihood of Evolutionary Trees Is Hard. 296-310 - Teresa M. Przytycka, George B. Davis, Nan Song, Dannie Durand:
Graph Theoretical Insights into Evolution of Multidomain Proteins. 311-325 - Ari Frank, Stephen Tanner, Pavel A. Pevzner:
Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry. 326-341 - Yunhu Wan, Ting Chen:
A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search. 342-356 - Marshall W. Bern, David Goldberg:
EigenMS: De Novo Analysis of Peptide Tandem Mass Spectra by Spectral Graph Partitioning. 357-372 - Eric S. Lander:
Biology as Information. 373-373 - Samuel S. Gross, Michael R. Brent:
Using Multiple Alignments to Improve Gene Prediction. 374-388 - Sören Sonnenburg, Gunnar Rätsch, Christin Schäfer:
Learning Interpretable SVMs for Biological Sequence Classification. 389-407 - Yan Liu, Jaime G. Carbonell, Peter Weigele, Vanathi Gopalakrishnan:
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition. 408-422 - Jinbo Xu:
Rapid Protein Side-Chain Packing via Tree Decomposition. 423-439 - Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
Recognition of Binding Patterns Common to a Set of Protein Structures. 440-455 - Chen Yanover, Tomer Hertz:
Predicting Protein-Peptide Binding Affinity by Learning Peptide-Peptide Distance Functions. 456-471 - Jonathan King, Cammie Haase-Pettingell, Ryan Simkovsky, Peter Weigele:
Amino Acid Sequence Control of the Folding of the Parallel beta-Helix, the Simplest beta-Sheet Fold. 472-473 - Nicholas Chia, Ralf Bundschuh:
A Practical Approach to Significance Assessment in Alignment with Gaps. 474-488 - Anton Valouev, Lei Li, Yu-Chi Liu, David C. Schwartz, Yi Yang, Yu Zhang, Michael S. Waterman:
Alignment of Optical Maps. 489-504 - James J. Collins:
Engineering Gene Regulatory Networks: A Reductionist Approach to Systems Biology. 505-505 - Chen-Hsiang Yeang, Tommi S. Jaakkola:
Modeling the Combinatorial Functions of Multiple Transcription Factors. 506-521 - Tommy Kaplan, Nir Friedman, Hanah Margalit:
Predicting Transcription Factor Binding Sites Using Structural Knowledge. 522-537 - Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris Wiggins, Christina S. Leslie:
Motif Discovery Through Predictive Modeling of Gene Regulation. 538-552 - Eran Halperin, Elad Hazan:
HAPLOFREQ - Estimating Haplotype Frequencies E.ciently. 553-568 - Vineet Bafna, Vikas Bansal:
Improved Recombination Lower Bounds for Haplotype Data. 569-584 - Zhihong Ding, Vladimir Filkov, Dan Gusfield:
A Linear-Time Algorithm for the Perfect Phylogeny Haplotyping (PPH) Problem. 585-600 - David Altshuler:
Human Genome Sequence Variation and the Inherited Basis of Common Disease. 601-602 - David Sankoff, Matthew Mazowita:
Stability of Rearrangement Measures in the Comparison of Genome Sequences. 603-614 - Anne Bergeron, Julia Mixtacki, Jens Stoye:
On Sorting by Translocations. 615-629
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