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ORCIDXianghong Jasmine Zhou
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2020 – today
- 2022
[j22]Ran Hu
, Xianghong Jasmine Zhou, Wenyuan Li:
Computational Analysis of High-Dimensional DNA Methylation Data for Cancer Prognosis. J. Comput. Biol. 29(8): 769-781 (2022)
2010 – 2019
- 2019
- [j21]Jianrong Li, Chun-Yip Tong, Tsai-Jung Sung, Ting-Yu Kang, Xianghong Jasmine Zhou, Chun-Chi Liu:
CMEP: a database for circulating microRNA expression profiling. Bioinform. 35(17): 3127-3132 (2019) - 2016
- [j20]Jianrong Li, Chuan-Hu Sun, Wenyuan Li, Rou-Fang Chao, Chieh-Chen Huang, Xianghong Jasmine Zhou, Chun-Chi Liu:
Cancer RNA-Seq Nexus: a database of phenotype-specific transcriptome profiling in cancer cells. Nucleic Acids Res. 44(Database-Issue): 944-951 (2016) - 2015
- [j19]Wenyuan Li, Ke Gong, Qingjiao Li, Frank Alber, Xianghong Jasmine Zhou:
Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data. Bioinform. 31(6): 960-962 (2015) - [j18]Wenhui Wang, Xianghong Jasmine Zhou, Zhenqiu Liu, Fengzhu Sun:
Network tuned multiple rank aggregation and applications to gene ranking. BMC Bioinform. 16(S-1): S6 (2015) - [j17]Yu-Ting Tseng, Wenyuan Li, Ching-Hsien Chen, Shi-Hua Zhang, Jeremy J. W. Chen, Xianghong Jasmine Zhou, Chun-Chi Liu:
IIIDB: a database for isoform-isoform interactions and isoform network modules. BMC Genom. 16(S-2): S10 (2015) - [j16]Quan Chen, Xianghong Jasmine Zhou, Fengzhu Sun:
Finding Genetic Overlaps Among Diseases Based on Ranked Gene Lists. J. Comput. Biol. 22(2): 111-123 (2015) - 2014
- [j15]Chun-Chi Liu, Yu-Ting Tseng, Wenyuan Li, Chia-Yu Wu, Ilya Mayzus, Andrey Rzhetsky, Fengzhu Sun, Michael S. Waterman, Jeremy J. W. Chen, Preet M. Chaudhary, Joseph Loscalzo, Edward Crandall, Xianghong Jasmine Zhou:
DiseaseConnect: a comprehensive web server for mechanism-based disease-disease connections. Nucleic Acids Res. 42(Webserver-Issue): 137-146 (2014) - 2012
- [j14]Wenyuan Li, Shi-Hua Zhang, Chun-Chi Liu, Xianghong Jasmine Zhou:
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data. Bioinform. 28(19): 2458-2466 (2012) - [j13]Chao Dai, Wenyuan Li, Juan Liu, Xianghong Jasmine Zhou:
Integrating many co-splicing networks to reconstruct splicing regulatory modules. BMC Syst. Biol. 6(S-1): S17 (2012) - [j12]Ting Chen, Paul Marjoram, Fengzhu Sun, Xianghong Jasmine Zhou:
Preface: Special Issue. J. Comput. Biol. 19(6): 575-576 (2012) - [j11]Wenyuan Li, Chao Dai, Chun-Chi Liu, Xianghong Jasmine Zhou:
Algorithm to Identify Frequent Coupled Modules from Two-Layered Network Series: Application to Study Transcription and Splicing Coupling. J. Comput. Biol. 19(6): 710-730 (2012) - 2011
- [j10]Shi-Hua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou:
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules. Bioinform. 27(13): 401-409 (2011) - [j9]Wenyuan Li, Chun-Chi Liu, Tong Zhang, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation. PLoS Comput. Biol. 7(6) (2011) - 2010
- [j8]Michael R. Mehan, Juan Nunez-Iglesias, Chao Dai, Michael S. Waterman, Xianghong Jasmine Zhou:
An integrative modular approach to systematically predict gene-phenotype associations. BMC Bioinform. 11(S-1): 62 (2010) - [j7]Wenyuan Li, Min Xu, Xianghong Jasmine Zhou:
Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets. J. Biomed. Informatics 43(4): 550-559 (2010)
2000 – 2009
- 2009
- [j6]Chun-Chi Liu, Jianjun Hu, Mrinal Kalakrishnan, Haiyan Huang, Xianghong Jasmine Zhou:
Integrative disease classification based on cross-platform microarray data. BMC Bioinform. 10(S-1) (2009) - [j5]Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou:
An Integrative Network Approach to Map the Transcriptome to the Phenome. J. Comput. Biol. 16(8): 1023-1034 (2009) - [c9]Rutu Mulkar-Mehta, Jerry R. Hobbs, Chun-Chi Liu, Xianghong Jasmine Zhou:
Discovering Causal and Temporal Relations in Biomedical Texts. AAAI Spring Symposium: Learning by Reading and Learning to Read 2009: 74-80 - [c8]Ruoming Jin, Scott McCallen, Chun-Chi Liu, Yang Xiang, Eivind Almaas, Xianghong Jasmine Zhou:
Identifying Dynamic Network Modules with Temporal and Spatial Constraints. Pacific Symposium on Biocomputing 2009: 203-214 - 2008
- [c7]Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou:
An Integrative Network Approach to Map the Transcriptome to the Phenome. RECOMB 2008: 232-245 - 2007
- [j4]Fei Pan, Chi-Hsien Chiu, Sudip Pulapura, Michael R. Mehan, Juan Nunez-Iglesias, Kangyu Zhang, Kiran Kamath, Michael S. Waterman, Caleb E. Finch, Xianghong Jasmine Zhou:
Gene Aging Nexus: a web database and data mining platform for microarray data on aging. Nucleic Acids Res. 35(Database-Issue): 756-759 (2007) - [c6]Min Xu, Ming-Chih J. Kao, Juan Nunez-Iglesias, Joseph Nevins, Mike West, Xianghong Jasmine Zhou:
Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer. BIOCOMP 2007: 693-699 - [c5]Yu Huang, Haifeng Li, Haiyan Hu, Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine Zhou:
Systematic discovery of functional modules and context-specific functional annotation of human genome. ISMB/ECCB (Supplement of Bioinformatics) 2007: 222-229 - [c4]Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou:
A graph-based approach to systematically reconstruct human transcriptional regulatory modules. ISMB/ECCB (Supplement of Bioinformatics) 2007: 577-586 - 2006
- [j3]Fei Pan, Kiran Kamath, Kangyu Zhang, Sudip Pulapura, Avinash Achar, Juan Nunez-Iglesias, Yu Huang, Xifeng Yan, Jiawei Han, Haiyan Hu, Min Xu, Jianjun Hu, Xianghong Jasmine Zhou:
Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. Bioinform. 22(13): 1665-1667 (2006) - [j2]Jianjun Hu, Haifeng Li, Michael S. Waterman, Xianghong Jasmine Zhou:
Integrative missing value estimation for microarray data. BMC Bioinform. 7: 449 (2006) - 2005
- [c3]Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han:
Mining Closed Relational Graphs with Connectivity Constraints. ICDE 2005: 357-358 - [c2]Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou:
Mining coherent dense subgraphs across massive biological networks for functional discovery. ISMB (Supplement of Bioinformatics) 2005: 213-221 - [c1]Xifeng Yan, Xianghong Jasmine Zhou, Jiawei Han:
Mining closed relational graphs with connectivity constraints. KDD 2005: 324-333 - 2004
- [j1]Haiyan Huang, Ming-Chih J. Kao, Xianghong Jasmine Zhou, Jun S. Liu, Wing Hung Wong:
Determination of Local Statistical Significance of Patterns in Markov Sequences with Application to Promoter Element Identification. J. Comput. Biol. 11(1): 1-14 (2004)
Coauthor Index
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