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Simona Panni
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2020 – today
- 2023
- [j10]Simona Panni, Kalpana Panneerselvam
, Pablo Porras, Margaret J. Duesbury, Livia Perfetto, Luana Licata
, Henning Hermjakob
, Sandra E. Orchard
:
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j9]Noemi del-Toro
, Anjali Shrivastava
, Eliot Ragueneau
, Birgit Meldal
, Colin W. Combe, Elisabet Barrera
, Livia Perfetto
, Karyn How, Prashansa Ratan, Gautam Shirodkar, Odilia Lu
, Bálint Mészáros
, Xavier Watkins, Sangya Pundir
, Luana Licata
, Marta Iannuccelli, Matteo Pellegrini
, Maria Jesus Martin
, Simona Panni
, Margaret J. Duesbury, Sylvain D. Vallet
, Juri Rappsilber, Sylvie Ricard-Blum
, Gianni Cesareni, Lukasz Salwínski, Sandra E. Orchard
, Pablo Porras
, Kalpana Panneerselvam
, Henning Hermjakob
:
The IntAct database: efficient access to fine-grained molecular interaction data. Nucleic Acids Res. 50(D1): 648-653 (2022) - 2021
- [j8]Vasundra Touré, Steven Vercruysse
, Marcio Luis Acencio
, Ruth C. Lovering
, Sandra E. Orchard
, Glyn Bradley, Cristina Casals-Casas, Claudine Chaouiya, Noemi del-Toro, Åsmund Flobak
, Pascale Gaudet
, Henning Hermjakob
, Charles Tapley Hoyt
, Luana Licata
, Astrid Lægreid, Christopher J. Mungall, Anne Niknejad, Simona Panni, Livia Perfetto, Pablo Porras
, Dexter Pratt
, Julio Saez-Rodriguez
, Denis Thieffry
, Paul D. Thomas
, Dénes Türei, Martin Kuiper
:
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST). Bioinform. 36(24): 5712-5718 (2021) - [j7]Blake A. Sweeney
, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman
, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell
, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish
, Jonathan M. Mudge
, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford
, Simona Panni, Pablo Porras
, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg:
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49(Database-Issue): D212-D220 (2021) - 2020
- [j6]Livia Perfetto
, Chiara Pastrello
, Noemi del-Toro
, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata
, Birgit Meldal
, Kalpana Panneerselvam, Simona Panni
, N. Rahimzadeh, Sylvie Ricard-Blum
, Lukasz Salwínski, Anjali Shrivastava
, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard
, Igor Jurisica, Henning Hermjakob
, Pablo Porras
:
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020)
2010 – 2019
- 2018
- [j5]M. Sivade Dumousseau, Diego Alonso-López
, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell
, Arnaud Céol
, Gianni Cesareni, Colin W. Combe
, Javier De Las Rivas
, Noemi del-Toro
, Joshua Heimbach, Henning Hermjakob
, Igor Jurisica, Maximilian Koch
, Luana Licata
, Ruth C. Lovering
, David J. Lynn
, Birgit H. M. Meldal
, Gos Micklem, Simona Panni
, Pablo Porras
, Sylvie Ricard-Blum
, Bernd Roechert, Lukasz Salwínski
, Anjali Shrivastava
, Julie M. Sullivan, Nicolas Thierry-Mieg
, Yo Yehudi
, Kim Van Roey, Sandra E. Orchard
:
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinform. 19(1): 134:1-134:8 (2018) - 2015
- [j4]Simona Panni
, Simona E. Rombo:
Searching for repetitions in biological networks: methods, resources and tools. Briefings Bioinform. 16(1): 118-136 (2015) - 2011
- [j3]Nicola Ferraro, Luigi Palopoli
, Simona Panni
, Simona E. Rombo:
Asymmetric Comparison and Querying of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 8(4): 876-889 (2011) - 2010
- [c6]Nicola Ferraro, Luigi Palopoli
, Simona Panni
, Simona E. Rombo:
"Master-Slave" Biological Network Alignment. ISBRA 2010: 215-229 - [c5]Nicola Ferraro, Luigi Palopoli, Simona Panni, Simona E. Rombo:
Asymmetric Global Alignment of Protein-Protein Interaction Graph Databases (Extended Abstract). SEBD 2010: 334-341
2000 – 2009
- 2009
- [j2]Valeria Fionda, Luigi Palopoli
, Simona Panni
, Simona E. Rombo:
A technique to search for functional similarities in protein-protein interaction networks. Int. J. Data Min. Bioinform. 3(4): 431-453 (2009) - [j1]Andrew Chatr-aryamontri, Arnaud Céol
, Daniele Peluso, Aurelio Nardozza, Simona Panni
, Francesca Sacco, Michele Tinti, Alex Smolyar, Luisa Castagnoli
, Marc Vidal, Michael E. Cusick, Gianni Cesareni:
VirusMINT: a viral protein interaction database. Nucleic Acids Res. 37(Database-Issue): 669-673 (2009) - [c4]Valeria Fionda, Luigi Palopoli
, Simona Panni
, Simona E. Rombo:
Extracting similar sub-graphs across PPI networks. ISCIS 2009: 183-188 - 2008
- [c3]Valeria Fionda, Luigi Palopoli, Simona Panni
, Simona E. Rombo:
Protein-Protein Interaction Network Querying by a "Focus and Zoom" Approach. BIRD 2008: 331-346 - [c2]Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo:
Singling out functional similarities in graph databases. SEBD 2008: 271-278 - 2007
- [c1]Valeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo:
GRAPPIN: Bipartite GRAph Based Protein-Protein Interaction Network Similarity Search. BIBM 2007: 355-361
Coauthor Index
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last updated on 2024-05-08 20:54 CEST by the dblp team
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