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ORCIDIgor Jurisica
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- affiliation: University of Toronto, Canada
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2020 – today
- 2023
[j49]Serene W. H. Wong
, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica:
USNAP: fast unique dense region detection and its application to lung cancer. Bioinform. 39(8) (2023)- [j48]Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky, Zuhaib Ahmed, Max Kotlyar, Richard Lu, Igor Jurisica:
MirDIP 5.2: tissue context annotation and novel microRNA curation. Nucleic Acids Res. 51(D1): 217-225 (2023) - 2022
- [j47]Giuseppe Agapito, Chiara Pastrello, Yun Niu, Igor Jurisica:
Pathway integration and annotation: building a puzzle with non-matching pieces and no reference picture. Briefings Bioinform. 23(5) (2022) - [j46]Tomás Tokár, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica:
miRAnno - network-based functional microRNA annotation. Bioinform. 38(2): 592-593 (2022) - [j45]Andreas Holzinger, Matthias Dehmer, Frank Emmert-Streib, Rita Cucchiara, Isabelle Augenstein, Javier Del Ser, Wojciech Samek, Igor Jurisica, Natalia Díaz Rodríguez:
Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence. Inf. Fusion 79: 263-278 (2022) - [j44]Max Kotlyar, Chiara Pastrello, Zuhaib Ahmed, Justin Chee, Zofia Varyova, Igor Jurisica:
IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. Nucleic Acids Res. 50(D1): 640-647 (2022) - 2021
- [j43]Giuseppe Agapito, Chiara Pastrello, Igor Jurisica:
Comprehensive pathway enrichment analysis workflows: COVID-19 case study. Briefings Bioinform. 22(2): 676-689 (2021) - 2020
- [j42]Livia Perfetto, Chiara Pastrello, Noemi del-Toro, Margaret J. Duesbury, Marta Iannuccelli, Max Kotlyar, Luana Licata, Birgit Meldal, Kalpana Panneerselvam, Simona Panni, N. Rahimzadeh, Sylvie Ricard-Blum, Lukasz Salwínski, Anjali Shrivastava, Gianni Cesareni, Matteo Pellegrini, Sandra E. Orchard, Igor Jurisica, Henning Hermjakob, Pablo Porras:
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions. Database J. Biol. Databases Curation 2020 (2020) - [j41]Tomás Tokár, Chiara Pastrello, Igor Jurisica:
GSOAP: a tool for visualization of gene set over-representation analysis. Bioinform. 36(9): 2923-2925 (2020) - [j40]Giuseppe Agapito, Chiara Pastrello, Pietro Hiram Guzzi, Igor Jurisica, Mario Cannataro:
BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways. Bioinform. 36(15): 4377-4378 (2020) - [j39]Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu, Christian A. Cumbaa, Proton Rahman, Vinod Chandran, Igor Jurisica:
pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. Nucleic Acids Res. 48(Database-Issue): D479-D488 (2020) - [p4]Chiara Pastrello, Max Kotlyar, Igor Jurisica:
Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID). Protein-Protein Interaction Networks 2020: 125-134
2010 – 2019
- 2019
- [j38]Max Kotlyar, Chiara Pastrello, Zara Malik, Igor Jurisica:
IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. Nucleic Acids Res. 47(Database-Issue): D581-D589 (2019) - [r3]Max Kotlyar, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica:
Protein-Protein Interaction Databases. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 988-996 - [r2]Anne-Christin Hauschild, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica:
Visualization of Biomedical Networks. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1016-1035 - [r1]Sara Rahmati, Chiara Pastrello, Andrea E. M. Rossos, Igor Jurisica:
Two Decades of Biological Pathway Databases: Results and Challenges. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1071-1084 - 2018
- [j37]M. Sivade Dumousseau, Diego Alonso-López, Mais G. Ammari, Glyn Bradley, Nancy H. Campbell, Arnaud Céol, Gianni Cesareni, Colin W. Combe, Javier De Las Rivas, Noemi del-Toro, Joshua Heimbach, Henning Hermjakob, Igor Jurisica, Maximilian Koch, Luana Licata, Ruth C. Lovering, David J. Lynn, Birgit H. M. Meldal, Gos Micklem, Simona Panni, Pablo Porras, Sylvie Ricard-Blum, Bernd Roechert, Lukasz Salwínski, Anjali Shrivastava, Julie M. Sullivan, Nicolas Thierry-Mieg, Yo Yehudi, Kim Van Roey, Sandra E. Orchard:
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. BMC Bioinform. 19(1): 134:1-134:8 (2018) - [j36]Tomás Tokár, Chiara Pastrello, Andrea E. M. Rossos, Mark Abovsky, Anne-Christin Hauschild, Mike Tsay, Richard Lu, Igor Jurisica:
mirDIP 4.1 - integrative database of human microRNA target predictions. Nucleic Acids Res. 46(Database-Issue): D360-D370 (2018) - [c25]Tomás Tokár, Igor Jurisica, Naomi P. Visanji, Christian Veillette:
Data-driven medicine: promise and challenges. CASCON 2018: 384-386 - [c24]Serene W. H. Wong, Chiara Pastrello, Max Kotlyar, Christos Faloutsos, Igor Jurisica:
SDREGION: Fast Spotting of Changing Communities in Biological Networks. KDD 2018: 867-875 - 2017
- [j35]Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica:
pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. Nucleic Acids Res. 45(Database-Issue): D419-D426 (2017) - [c23]Serene Wong, Igor Jurisica:
Big data analytics: challenges and applications to health care. CASCON 2017: 338 - 2016
- [j34]Andrea Vargas, Marc Angeli, Chiara Pastrello, Rosanne McQuaid, Han Li, Andrea Jurisicova, Igor Jurisica:
Robust quantitative scratch assay. Bioinform. 32(9): 1439-1440 (2016) - [j33]Max Kotlyar, Chiara Pastrello, Nicholas Sheahan, Igor Jurisica:
Integrated interactions database: tissue-specific view of the human and model organism interactomes. Nucleic Acids Res. 44(Database-Issue): 536-541 (2016) - [c22]Simon J. Larsen, Frederik G. Alkærsig, Henrik J. Ditzel, Igor Jurisica, Nicolas Alcaraz, Jan Baumbach:
A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection in Biological Networks. GECCO 2016: 341-348 - [p3]Fleur Jeanquartier, Claire Jean-Quartier, Max Kotlyar, Tomás Tokár, Anne-Christin Hauschild, Igor Jurisica, Andreas Holzinger:
Machine Learning for In Silico Modeling of Tumor Growth. Machine Learning for Health Informatics 2016: 415-434 - 2015
- [j32]Julia Hoeng, Manuel C. Peitsch, Pablo Meyer, Igor Jurisica:
Where are we at regarding species translation? A review of the sbv IMPROVER challenge. Bioinform. 31(4): 451-452 (2015) - [j31]Kristen Fortney, Joshua Griesman, Max Kotlyar, Chiara Pastrello, Marc Angeli, Ming-Sound Tsao, Igor Jurisica:
Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data. PLoS Comput. Biol. 11(3) (2015) - 2014
- [j30]Andreas Holzinger, Matthias Dehmer, Igor Jurisica:
Knowledge Discovery and interactive Data Mining in Bioinformatics - State-of-the-Art, future challenges and research directions. BMC Bioinform. 15(S-6): I1 (2014) - [p2]Andreas Holzinger, Igor Jurisica:
Knowledge Discovery and Data Mining in Biomedical Informatics: The Future Is in Integrative, Interactive Machine Learning Solutions. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics 2014: 1-18 - [p1]David Otasek, Chiara Pastrello, Andreas Holzinger, Igor Jurisica:
Visual Data Mining: Effective Exploration of the Biological Universe. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics 2014: 19-33 - [e2]Andreas Holzinger, Igor Jurisica:
Interactive Knowledge Discovery and Data Mining in Biomedical Informatics - State-of-the-Art and Future Challenges. Lecture Notes in Computer Science 8401, Springer 2014, ISBN 978-3-662-43967-8 [contents] - 2013
- [j29]Fatemeh Vafaee, Daniela Rosu, Fiona Broackes-Carter, Igor Jurisica:
Novel semantic similarity measure improves an integrative approach to predicting gene functional associations. BMC Syst. Biol. 7: 22 (2013) - [j28]Kristen Fortney, Wing Xie, Max Kotlyar, Joshua Griesman, Yulia Kotseruba, Igor Jurisica:
NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. Nucleic Acids Res. 41(Database-Issue): 720-727 (2013) - [j27]Chiara Pastrello, David Otasek, Kristen Fortney, Giuseppe Agapito, Mario Cannataro, Elize Shirdel, Igor Jurisica:
Visual Data Mining of Biological Networks: One Size Does Not Fit All. PLoS Comput. Biol. 9(1) (2013) - [e1]Christopher J. O. Baker, Greg Butler, Igor Jurisica:
Data Integration in the Life Sciences - 9th International Conference, DILS 2013, Montreal, QC, Canada, July 11-12, 2013. Proceedings. Lecture Notes in Computer Science 7970, Springer 2013, ISBN 978-3-642-39436-2 [contents] - 2012
- [j26]Abraham Heifets, Igor Jurisica:
SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents. Nucleic Acids Res. 40(Database-Issue): 428-433 (2012) - [c21]Abraham Heifets, Igor Jurisica:
Construction of New Medicines via Game Proof Search. AAAI 2012: 1564-1570 - 2011
- [j25]Rui Yan, Paul C. Boutros, Igor Jurisica:
A tree-based approach for motif discovery and sequence classification. Bioinform. 27(15): 2054-2061 (2011) - [j24]Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica:
Optimized application of penalized regression methods to diverse genomic data. Bioinform. 27(24): 3399-3406 (2011) - [j23]Zohar Yakhini, Igor Jurisica:
Cancer Computational Biology. BMC Bioinform. 12: 120 (2011) - [j22]Amira Djebbari, Muhammad Ali, David Otasek, Max Kotlyar, Kristen Fortney, Serene Wong, Anthony Hrvojic, Igor Jurisica:
NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs. Internet Math. 7(4): 314-347 (2011) - [j21]Niloofar Arshadi, Igor Jurisica:
Ensembles of case-based reasoning classifiers in high-dimensional biological domains. WIREs Data Mining Knowl. Discov. 1(2): 164-171 (2011) - [c20]Amira Djebbari, Igor Jurisica:
Next-generation, scalable network visualization and analysis. CASCON 2011: 316-317 - 2010
- [j20]Yun Niu, David Otasek, Igor Jurisica:
Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D. Bioinform. 26(1): 111-119 (2010) - [j19]Christophe Viau, Michael J. McGuffin, Yves Chiricota, Igor Jurisica:
The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional Visualizations for Network Exploration. IEEE Trans. Vis. Comput. Graph. 16(6): 1100-1108 (2010) - [c19]Edward Xia, Igor Jurisica, Julie Waterhouse, Valerie Sloan:
Runtime Estimation Using the Case-Based Reasoning Approach for Scheduling in a Grid Environment. ICCBR 2010: 525-539
2000 – 2009
- 2009
- [j18]Kevin R. Brown, David Otasek, Muhammad Ali, Michael J. McGuffin, Wing Xie, Baiju Devani, Ian Lawson van Toch, Igor Jurisica:
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto. Bioinform. 25(24): 3327-3329 (2009) - [j17]Michael J. McGuffin, Igor Jurisica:
Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations. IEEE Trans. Vis. Comput. Graph. 15(6): 937-944 (2009) - [c18]Vinay K. Chaudhri, Igor Jurisica, Manolis Koubarakis, Dimitris Plexousakis, Thodoros Topaloglou:
The KBMS Project and Beyond. Conceptual Modeling: Foundations and Applications 2009: 466-482 - 2008
- [c17]Yun Niu, Igor Jurisica:
Detecting Protein-Protein Interaction Sentences Using a Mixture Model. NLDB 2008: 352-354 - 2007
- [c16]Rui Yan, Paul C. Boutros, Igor Jurisica, Linda Z. Penn:
Comparison of Machine Learning and Pattern Discovery Algorithms for the Prediction of Human Single Nucleotide Polymorphisms. GrC 2007: 452-457 - 2006
- [j16]Natasa Przulj, Derek G. Corneil, Igor Jurisica:
Efficient estimation of graphlet frequency distributions in protein-protein interaction networks. Bioinform. 22(8): 974-980 (2006) - [j15]Igor Jurisica, Janice I. Glasgow:
Introduction: Knowledge Discovery in High-Throughput Biological Domains. Inf. Syst. Frontiers 8(1): 5-7 (2006) - [j14]Max Kotlyar, Igor Jurisica:
Predicting Protein-Protein Interactions by Association Mining. Inf. Syst. Frontiers 8(1): 37-47 (2006) - [c15]Edward Xia, Igor Jurisica, Julie Waterhouse:
CasSim: a top-level-simulator for grid scheduling and applications. CASCON 2006: 353-356 - 2005
- [j13]Kevin R. Brown, Igor Jurisica:
Online Predicted Human Interaction Database. Bioinform. 21(9): 2076-2082 (2005) - [j12]Niloofar Arshadi, Igor Jurisica:
Data Mining for Case-Based Reasoning in High-Dimensional Biological Domains. IEEE Trans. Knowl. Data Eng. 17(8): 1127-1137 (2005) - [c14]Edward Xia, Igor Jurisica, Julie Waterhouse, Valerie Sloan:
Scheduling functional regression tests for IBM DB2 products. CASCON 2005: 292-304 - [c13]Niloofar Arshadi, Igor Jurisica:
Feature Selection for Improving Case-Based Classifiers on High-Dimensional Data Sets. FLAIRS 2005: 99-104 - [c12]Niloofar Arshadi, Igor Jurisica:
An Ensemble of Case-Based Classifiers for High-Dimensional Biological Domains. ICCBR 2005: 21-34 - 2004
- [j11]Janice I. Glasgow, Igor Jurisica, Burkhard Rost:
AI and Bioinformatics. AI Mag. 25(1): 7-8 (2004) - [j10]Igor Jurisica, Janice I. Glasgow:
Applications of Case-Based Reasoning in Molecular Biology. AI Mag. 25(1): 85-96 (2004) - [j9]Natasa Przulj, Dennis A. Wigle, Igor Jurisica:
Functional topology in a network of protein interactions. Bioinform. 20(3): 340-348 (2004) - [j8]Andrew D. King, Natasa Przulj, Igor Jurisica:
Protein complex prediction via cost-based clustering. Bioinform. 20(17): 3013-3020 (2004) - [j7]Natasa Przulj, Derek G. Corneil, Igor Jurisica:
Modeling interactome: scale-free or geometric?. Bioinform. 20(18): 3508-3515 (2004) - [j6]Igor Jurisica, John Mylopoulos, Eric S. K. Yu:
Ontologies for Knowledge Management: An Information Systems Perspective. Knowl. Inf. Syst. 6(4): 380-401 (2004) - [c11]Niloofar Arshadi, Igor Jurisica:
Maintaining Case-Based Reasoning Systems: A Machine Learning Approach. ECCBR 2004: 17-31 - 2002
- [c10]Mujahid Sultan, Dennis A. Wigle, Christian A. Cumbaa, Marlena Maziarz, Janice I. Glasgow, Ming-Sound Tsao, Igor Jurisica:
Binary tree-structured vector quantization approach to clustering and visualizing microarray data. ISMB 2002: 111-119 - 2001
- [j5]Igor Jurisica, Patrick Rogers, Janice I. Glasgow, Robert J. Collins, Jennifer R. Wolfley, Joseph R. Luft, George T. DeTitta:
Improving Objectivity and Scalability in Protein Crystallization: Integrating Image Analysis With Knowledge Discovery. IEEE Intell. Syst. 16(6): 26-34 (2001) - [j4]Igor Jurisica, Patrick Rogers, Janice I. Glasgow, Suzanne Fortier, Joseph R. Luft, Jennifer R. Wolfley, Melissa A. Bianca, Daniel R. Weeks, George T. DeTitta:
Intelligent decision support for protein crystal growth. IBM Syst. J. 40(2): 394-409 (2001) - [c9]Igor Jurisica, Phil Rogers, Janice I. Glasgow, Suzanne Fortier, Joseph R. Luft, Melissa A. Bianca, Robert J. Collins, George T. DeTitta:
Image-Feature Extraction for Protein Crystallization: Integrating Image Analysis and Case-Based Reasoning. IAAI 2001: 73-80 - 2000
- [j3]Igor Jurisica, Janice I. Glasgow, John Mylopoulos:
Incremental Iterative Retrieval and Browsing for Efficient Conversational CBR Systems. Appl. Intell. 12(3): 251-268 (2000) - [c8]Aris Floratos, Igor Jurisica, Isidore Rigoutsos:
Knowledge discovery in biological domains (tutorial AM-3). KDD Tutorial Notes 2000: 95-163 - [c7]Igor Jurisica, Janice I. Glasgow:
Extending Case-Based Reasoning by Discovering and Using Image Features in IVF. SAC (1) 2000: 52-59
1990 – 1999
- 1998
- [b1]Igor Jurisica:
TA3: theory, implementation, and applications of similarity-based retrieval for case-based reasoning. University of Toronto, Canada, 1998 - [j2]Igor Jurisica, John Mylopoulos, Janice I. Glasgow, Heather Shapiro, Robert F. Casper:
Case-based reasoning in IVF: prediction and knowledge mining. Artif. Intell. Medicine 12(1): 1-24 (1998) - [c6]Igor Jurisica, Brian A. Nixon:
Building Quality into Case-Based Reasoning Systems. CAiSE 1998: 363-380 - [c5]Igor Jurisica, Janice I. Glasgow:
An Efficient Approach to Iterative Browsing and Retrieval for Case-Based Reasoning. IEA/AIE (Vol. 2) 1998: 535-546 - [c4]Homayoun Dayani-Fard, Igor Jurisica:
Reverse Engineering by Mining Dynamic Repositories. WCRE 1998: 174-182 - 1997
- [j1]Igor Jurisica, Janice I. Glasgow:
Improving Performance of Case-Based Classification Using Context-Based Relevance. Int. J. Artif. Intell. Tools 6(4): 511-536 (1997) - [c3]Igor Jurisica:
Similarity-based retrieval for diverse bookshelf software repository users. CASCON 1997: 10 - 1996
- [c2]Igor Jurisica, Janice I. Glasgow:
Case-Based Classification Using Similarity-Based Retrieval. ICTAI 1996: 410-419 - 1992
- [c1]Russell Greiner, Igor Jurisica:
A Statistical Approach to Solving the EBL Utility Problem. AAAI 1992: 241-248
Coauthor Index
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