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Curtis Huttenhower
Person information
- award (2011): Presidential Early Career Award for Scientists and Engineers
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2020 – today
- 2022
- [j33]Alexander G. McFarland
, Nolan W. Kennedy
, Carolyn E. Mills, Danielle Tullman-Ercek, Curtis Huttenhower
, Erica M. Hartmann:
Density-based binning of gene clusters to infer function or evolutionary history using GeneGrouper. Bioinform. 38(3): 612-620 (2022) - 2021
- [j32]Yancong Zhang
, Kelsey N. Thompson, Curtis Huttenhower, Eric A. Franzosa
:
Statistical approaches for differential expression analysis in metatranscriptomics. Bioinform. 37(Supplement): 34-41 (2021) - [j31]Siyuan Ma
, Boyu Ren
, Himel Mallick
, Yo Sup Moon
, Emma H. Schwager
, Sagun Maharjan
, Timothy L. Tickle
, Yiren Lu, Rachel N. Carmody
, Eric A. Franzosa
, Lucas Janson, Curtis Huttenhower:
A statistical model for describing and simulating microbial community profiles. PLoS Comput. Biol. 17(9) (2021) - [j30]Himel Mallick
, Ali Rahnavard
, Lauren J. McIver
, Siyuan Ma
, Yancong Zhang
, Long H. Nguyen
, Timothy L. Tickle
, George Weingart, Boyu Ren
, Emma H. Schwager
, Suvo Chatterjee
, Kelsey N. Thompson
, Jeremy E. Wilkinson
, Ayshwarya Subramanian
, Yiren Lu, Levi Waldron
, Joseph N. Paulson
, Eric A. Franzosa
, Héctor Corrada Bravo, Curtis Huttenhower
:
Multivariable association discovery in population-scale meta-omics studies. PLoS Comput. Biol. 17(11) (2021)
2010 – 2019
- 2018
- [j29]Lauren J. McIver, Galeb Abu-Ali, Eric A. Franzosa
, Randall Schwager, Xochitl C. Morgan, Levi Waldron
, Nicola Segata
, Curtis Huttenhower:
bioBakery: a meta'omic analysis environment. Bioinform. 34(7): 1235-1237 (2018) - 2017
- [j28]Emma H. Schwager
, Himel Mallick
, Steffen Ventz, Curtis Huttenhower:
A Bayesian method for detecting pairwise associations in compositional data. PLoS Comput. Biol. 13(11) (2017) - [c4]Soha Hassoun, Curtis Huttenhower:
A Workshop on Microbiomics, Metagenomics, and Metabolomics. BCB 2017: 776 - 2016
- [j27]Daniela Börnigen, Svitlana Tyekucheva, Xiaodong Wang, Jennifer R. Rider
, Gwo-Shu Lee, Lorelei A. Mucci, Christopher Sweeney, Curtis Huttenhower:
Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j26]James Kaminski, Molly K. Gibson, Eric A. Franzosa
, Nicola Segata
, Gautam Dantas
, Curtis Huttenhower:
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED. PLoS Comput. Biol. 11(12) (2015) - 2014
- [j25]Christoph Bernau, Markus Riester
, Anne-Laure Boulesteix
, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
, Lorenzo Trippa:
Cross-study validation for the assessment of prediction algorithms. Bioinform. 30(12): 105-112 (2014) - [j24]Sihai Dave Zhao
, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron
:
Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis. Bioinform. 30(21): 3062-3069 (2014) - [j23]Katherine Huang, Arthur Brady
, Anup Mahurkar, Owen White, Dirk Gevers, Curtis Huttenhower, Nicola Segata
:
MetaRef: a pan-genomic database for comparative and community microbial genomics. Nucleic Acids Res. 42(Database-Issue): 617-624 (2014) - 2013
- [j22]Benjamin Frederick Ganzfried, Markus Riester
, Benjamin Haibe-Kains
, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower
, Levi Waldron
:
curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome. Database J. Biol. Databases Curation 2013 (2013) - [j21]Omry Koren
, Dan Knight, Antonio González, Levi Waldron
, Nicola Segata
, Rob Knight
, Curtis Huttenhower
, Ruth E. Ley
:
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets. PLoS Comput. Biol. 9(1) (2013) - [j20]Regina Joice
, Vagheesh Narasimhan
, Jacqui Montgomery, Amar Bir Sidhu, Keunyoung Oh, Evan Meyer, Willythssa Pierre-Louis, Karl Seydel, Danny Milner
, Kim Williamson, Roger Wiegand, Daouda Ndiaye, Johanna Daily, Dyann Wirth, Terrie Taylor, Curtis Huttenhower, Matthias Marti:
Inferring Developmental Stage Composition from Gene Expression in Human Malaria. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j19]Sahar Abubucker, Nicola Segata
, Johannes Goll, Alyxandria M. Schubert, Jacques Izard
, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker
, Mathangi Thiagarajan, Bernard Henrissat
, Owen White, Scott T. Kelley, Barbara A. Methé, Patrick D. Schloss
, Dirk Gevers, Makedonka Dautova Mitreva
, Curtis Huttenhower
:
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Comput. Biol. 8(6) (2012) - [j18]Karoline Faust
, Jarupon Fah Sathirapongsasuti
, Jacques Izard
, Nicola Segata
, Dirk Gevers, Jeroen Raes
, Curtis Huttenhower
:
Microbial Co-occurrence Relationships in the Human Microbiome. PLoS Comput. Biol. 8(7) (2012) - [j17]Dirk Gevers, Mihai Pop
, Patrick D. Schloss
, Curtis Huttenhower
:
Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. 8(11) (2012) - [j16]Xochitl C. Morgan
, Curtis Huttenhower
:
Chapter 12: Human Microbiome Analysis. PLoS Comput. Biol. 8(12) (2012) - 2011
- [j15]Levi Waldron
, Melania Pintilie, Ming-Sound Tsao
, Frances A. Shepherd, Curtis Huttenhower
, Igor Jurisica:
Optimized application of penalized regression methods to diverse genomic data. Bioinform. 27(24): 3399-3406 (2011) - 2010
- [j14]Ana Pop, Curtis Huttenhower
, Anjali Iyer-Pascuzzi
, Philip N. Benfey, Olga G. Troyanskaya
:
Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana. BMC Syst. Biol. 4: 180 (2010) - [j13]Curtis Huttenhower
, Oliver Hofmann
:
A Quick Guide to Large-Scale Genomic Data Mining. PLoS Comput. Biol. 6(5) (2010) - [j12]Christopher Y. Park, David C. Hess, Curtis Huttenhower
, Olga G. Troyanskaya
:
Simultaneous Genome-Wide Inference of Physical, Genetic, Regulatory, and Functional Pathway Components. PLoS Comput. Biol. 6(11) (2010)
2000 – 2009
- 2009
- [j11]Curtis Huttenhower
, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy
, David C. Hess, Olga G. Troyanskaya
:
The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinform. 25(18): 2404-2410 (2009) - [j10]Curtis Huttenhower
, K. Tsheko Mutungu, Natasha Indik, Woongcheol Yang, Mark Schroeder, Joshua J. Forman
, Olga G. Troyanskaya
, Hilary A. Coller:
Detailing regulatory networks through large scale data integration. Bioinform. 25(24): 3267-3274 (2009) - [j9]Curtis Huttenhower
, Sajid O. Mehmood, Olga G. Troyanskaya
:
Graphle: Interactive exploration of large, dense graphs. BMC Bioinform. 10: 417 (2009) - [j8]Edoardo M. Airoldi
, Curtis Huttenhower
, David Gresham, Charles Lu, Amy A. Caudy
, Maitreya J. Dunham
, James R. Broach
, David Botstein, Olga G. Troyanskaya
:
Predicting Cellular Growth from Gene Expression Signatures. PLoS Comput. Biol. 5(1) (2009) - [j7]Matthew A. Hibbs, Chad L. Myers, Curtis Huttenhower
, David C. Hess, Kai Li, Amy A. Caudy
, Olga G. Troyanskaya
:
Directing Experimental Biology: A Case Study in Mitochondrial Biogenesis. PLoS Comput. Biol. 5(3) (2009) - [j6]Maria D. Chikina, Curtis Huttenhower
, Coleen T. Murphy
, Olga G. Troyanskaya
:
Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis elegans. PLoS Comput. Biol. 5(6) (2009) - 2008
- [j5]Curtis Huttenhower
, Mark Schroeder, Maria D. Chikina, Olga G. Troyanskaya
:
The Sleipnir library for computational functional genomics. Bioinform. 24(13): 1559-1561 (2008) - [c3]Curtis Huttenhower
, Olga G. Troyanskaya
:
Assessing the functional structure of genomic data. ISMB 2008: 330-338 - 2007
- [j4]Matthew A. Hibbs, David C. Hess, Chad L. Myers, Curtis Huttenhower
, Kai Li, Olga G. Troyanskaya
:
Exploring the functional landscape of gene expression: directed search of large microarray compendia. Bioinform. 23(20): 2692-2699 (2007) - [j3]Curtis Huttenhower
, Avi I. Flamholz
, Jessica N. Landis, Sauhard Sahi, Chad L. Myers, Kellen L. Olszewski, Matthew A. Hibbs, Nathan O. Siemers, Olga G. Troyanskaya
, Hilary A. Coller:
Nearest Neighbor Networks: clustering expression data based on gene neighborhoods. BMC Bioinform. 8 (2007) - 2006
- [j2]Curtis Huttenhower
, Matthew A. Hibbs, Chad L. Myers, Olga G. Troyanskaya
:
A scalable method for integration and functional analysis of multiple microarray datasets. Bioinform. 22(23): 2890-2897 (2006) - [j1]Rachel S. G. Sealfon, Matthew A. Hibbs, Curtis Huttenhower, Chad L. Myers, Olga G. Troyanskaya
:
GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. BMC Bioinform. 7: 443 (2006) - 2005
- [c2]Curtis Huttenhower, Olga G. Troyanskaya:
A General Methodology for Integration of Microarray Data. CSB Workshops 2005: 109 - 2003
- [c1]Eric Nyberg, Teruko Mitamura, James P. Callan, Jaime G. Carbonell, Robert E. Frederking, Kevyn Collins-Thompson, Laurie Hiyakumoto, Yifen Huang, Curtis Huttenhower, Scott Judy, Jeongwoo Ko, Anna Kupsc, Lucian Vlad Lita, Vasco Pedro, David Svoboda, Benjamin Van Durme:
The JAVELIN Question-Answering System at TREC 2003: A Multi-Strategh Approach with Dynamic Planning. TREC 2003
Coauthor Index
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