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David A. Bader

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affiliation: New Jersey Institute of Technology, Newark, NJ, USA
affiliation (former): Georgia Institute of Technology, Atlanta, GA, USA

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2020 – today

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2024
[i19]
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  - journals/corr/abs-2403-02997
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David A. Bader, Fuhuan Li, Zhihui Du, Palina Pauliuchenka, Oliver Alvarado Rodriguez, Anant Gupta, Sai Sri Vastav Minnal, Valmik Nahata, Anya Ganeshan, Ahmet Gündogdu, Jason Lew:
Cover Edge-Based Novel Triangle Counting. CoRR abs/2403.02997 (2024)
[i18]
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  - journals/corr/abs-2403-04989
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Fernando Vera, Palina Pauliuchenka, Ethan Oh, Bai Chien Kao, Louis DiValentin, David A. Bader:
Profile of Vulnerability Remediations in Dependencies Using Graph Analysis. CoRR abs/2403.04989 (2024)
2023
[j69]
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Zhihui Du, Sen Zhang, David A. Bader:
Tunnel: Parallel-inducing sort for large string analytics. Future Gener. Comput. Syst. 149: 650-663 (2023)
[j68]
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Ivan Hendy Goenawan, Zhihui Du, Chao Wu, Yankui Sun, Jianyan Wei, David A. Bader:
Dynamics signature based anomaly detection. Softw. Pract. Exp. 53(1): 160-175 (2023)
[j67]
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Chen Yang, Zhihui Du, Xiaofeng Meng, Xukang Zhang, Xinli Hao, David A. Bader:
Anomaly Detection in Catalog Streams. IEEE Trans. Big Data 9(1): 294-311 (2023)
[c163]
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Zhihui Du, Oliver Alvarado Rodriguez, Fuhuan Li, Mohammad Dindoost, David A. Bader:
Contour Algorithm for Connectivity. HiPC 2023: 66-75
[c162]
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David A. Bader:
Fast Triangle Counting. HPEC 2023: 1-6
[c161]
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David A. Bader, Fuhuan Li, Anya Ganeshan, Ahmet Gündogdu, Jason Lew, Oliver Alvarado Rodriguez, Zhihui Du:
Triangle Counting Through Cover-Edges. HPEC 2023: 1-7
[c160]
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Oliver Alvarado Rodriguez, Fernando Vera Buschmann, Zhihui Du, David A. Bader:
Property Graphs in Arachne. HPEC 2023: 1-7
[c159]
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Soroush Vahidi, Baruch Schieber, Zhihui Du, David A. Bader:
Parallel Longest Common SubSequence Analysis In Chapel. HPEC 2023: 1-6
[c158]
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Luca Cappelletti, Tommaso Fontana, Oded Green, David A. Bader:
Parallel Triangles and Squares Count for Multigraphs Using Vertex Covers. ICCS (4) 2023: 635-646
[c157]
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Luca Cappelletti, Tommaso Fontana, Justin T. Reese, David A. Bader:
Billion-scale Detection of Isomorphic Nodes. IPDPS Workshops 2023: 230-233
[i17]
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  - journals/corr/abs-2309-09064
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David A. Bader:
Fast Triangle Counting. CoRR abs/2309.09064 (2023)
[i16]
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  - journals/corr/abs-2309-09072
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Soroush Vahidi, Baruch Schieber, Zhihui Du, David A. Bader:
Parallel Longest Common SubSequence Analysis In Chapel. CoRR abs/2309.09072 (2023)
[i15]
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  - journals/corr/abs-2309-09943
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Oliver Alvarado Rodriguez, Fernando Vera Buschmann, Zhihui Du, David A. Bader:
Property Graphs in Arachne. CoRR abs/2309.09943 (2023)
[i14]
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  - journals/corr/abs-2311-02811
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Zhihui Du, Oliver Alvarado Rodriguez, Fuhuan Li, Mohammad Dindoost, David A. Bader:
Contour Algorithm for Connectivity. CoRR abs/2311.02811 (2023)
2022
[j66]
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Matthew R. Norman, David A. Bader, Christopher Eldred, Walter M. Hannah, Benjamin R. Hillman, Christopher R. Jones, Jungmin M. Lee, L. Ruby Leung, Isaac Lyngaas, Kyle G. Pressel, Sarat Sreepathi, Mark A. Taylor, Xingqiu Yuan:
Unprecedented cloud resolution in a GPU-enabled full-physics atmospheric climate simulation on OLCF's summit supercomputer. Int. J. High Perform. Comput. Appl. 36(1): 93-105 (2022)
[j65]
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Alexander van der Grinten, Elisabetta Bergamini, Oded Green, David A. Bader, Henning Meyerhenke:
Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. ACM J. Exp. Algorithmics 27: 1.7:1-1.7:16 (2022)
[j64]
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David A. Bader, Paul Burkhardt:
A Simple and Efficient Algorithm for Finding Minimum Spanning Tree Replacement Edges. J. Graph Algorithms Appl. 26(1): 577-588 (2022)
[c156]
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Zhihui Du, Joseph Patchett, Oliver Alvarado Rodriguez, Fuhuan Li, David A. Bader:
High-Performance Truss Analytics in Arkouda. HIPC 2022: 105-114
[c155]
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Zhihui Du, Sen Zhang, David A. Bader:
Parallel Suffix Sorting for Large String Analytics. PPAM (1) 2022: 71-82
[p7]
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  - books/crc/22/KepnerABBF0H0LMMMOYZM22
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Jeremy Kepner, Peter Aaltonen, David A. Bader, Aydin Buluç, Franz Franchetti, John Gilbert, Shana Hutchison, Manoj Kumar, Andrew Lumsdaine, Henning Meyerhenke, Scott McMillan, José E. Moreira, John D. Owens, Carl Yang, Marcin Zalewski, Timothy G. Mattson:
Introduction to GraphBLAS. Massive Graph Analytics 2022: 507-524
[p6]
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Zhihui Du, Oliver Alvarado Rodriguez, Joseph Patchett, David A. Bader:
Interactive Graph Analytics at Scale in Arkouda. Massive Graph Analytics 2022: 549-589
[e6]
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David A. Bader:
Massive Graph Analytics. Chapman and Hall/CRC 2022, ISBN 9781003033707 [contents]
[i13]
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  - journals/corr/abs-2210-00389
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David A. Bader, Fuhuan Li, Anya Ganeshan, Ahmet Gündogdu, Jason Lew, Oliver Alvarado Rodriguez, Zhihui Du:
A Novel Parallel Triangle Counting Algorithm with Reduced Communication. CoRR abs/2210.00389 (2022)
2021
[j63]
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Zhihui Du, Oliver Alvarado Rodriguez, Joseph Patchett, David A. Bader:
Interactive Graph Stream Analytics in Arkouda. Algorithms 14(8): 221 (2021)
[j62]
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  - journals/annals/BaderM21
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David A. Bader:
Linux and Supercomputing: How My Passion for Building COTS Systems Led to an HPC Revolution. IEEE Ann. Hist. Comput. 43(3): 73-80 (2021)
[c154]
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David A. Bader:
Interactive data science at scale. CF 2021: 210
[c153]
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Oded Green, Zhihui Du, Sanyamee Patel, Zehui Xie, Hang Liu, David A. Bader:
Anti-Section Transitive Closure. HiPC 2021: 192-201
[c152]
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Zhihui Du, Oliver Alvarado Rodriguez, David A. Bader:
Large Scale String Analytics in Arkouda. HPEC 2021: 1-7
[c151]
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Zhihui Du, Oliver Alvarado Rodriguez, David A. Bader:
Enabling Exploratory Large Scale Graph Analytics through Arkouda. HPEC 2021: 1-7
[c150]
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  - conf/hpec/LiB21
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Fuhuan Li, David A. Bader:
A GraphBLAS Implementation of Triangle Centrality. HPEC 2021: 1-2
[c149]
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  - conf/ipps/SzarnyasB0KMMW21
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Gábor Szárnyas, David A. Bader, Timothy A. Davis, James Kitchen, Timothy G. Mattson, Scott McMillan, Erik Welch:
LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms. IPDPS Workshops 2021: 243-252
[i12]
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  - journals/corr/abs-2104-01661
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Gábor Szárnyas, David A. Bader, Timothy A. Davis, James Kitchen, Timothy G. Mattson, Scott McMillan, Erik Welch:
LAGraph: Linear Algebra, Network Analysis Libraries, and the Study of Graph Algorithms. CoRR abs/2104.01661 (2021)
2020
[j61]
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Prasun Gera, Hyojong Kim, Piyush Sao, Hyesoon Kim, David A. Bader:
Traversing Large Graphs on GPUs with Unified Memory. Proc. VLDB Endow. 13(7): 1119-1133 (2020)
[c148]
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Zhihui Du, Sen Zhang, David A. Bader, Jingkun Hu:
An Efficient LP Rounding Scheme for Replica Placement. HPEC 2020: 1-7
[c147]
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Todd Hricik, David A. Bader, Oded Green:
Using RAPIDS AI to Accelerate Graph Data Science Workflows. HPEC 2020: 1-4
[c146]
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  - conf/hpec/MinorDSBWW20
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Austin Chase Minor, Zhihui Du, Yankui Sun, David A. Bader, Chao Wu, Jianyan Wei:
GPU Accelerated Anomaly Detection of Large Scale Light Curves. HPEC 2020: 1-7
[c145]
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Jingkun Hu, Zhihui Du, Sen Zhang, David A. Bader:
QoS-Aware and Fault-Tolerant Replica Placement. ICA3PP (2) 2020: 157-172
[c144]
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  - conf/kdd/RichardsonRDOBA20
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Bartley Richardson, Bradley Rees, Tom Drabas, Even Oldridge, David A. Bader, Rachel Allen:
Accelerating and Expanding End-to-End Data Science Workflows with DL/ML Interoperability Using RAPIDS. KDD 2020: 3503-3504

2010 – 2019

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2019
[j60]
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Lluís-Miquel Munguía, Shabbir Ahmed, David A. Bader, George L. Nemhauser, Yufen Shao, Dimitri J. Papageorgiou:
Tailoring parallel alternating criteria search for domain specific MIPs: Application to maritime inventory routing. Comput. Oper. Res. 111: 21-34 (2019)
[j59]
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David A. Bader:
Editorial from the Editor-in-Chief. ACM Trans. Parallel Comput. 6(1): 1:1-1:2 (2019)
[c143]
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Xiaojing An, Kasimir Gabert, James Fox, Oded Green, David A. Bader:
Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems. HPEC 2019: 1-7
[c142]
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Oded Green, James Fox, Jeffrey Young, Jun Shirako, David A. Bader:
Performance Impact of Memory Channels on Sparse and Irregular Algorithms. IA3@SC 2019: 67-70
[i11]
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  - journals/corr/abs-1908-03473
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David A. Bader, Paul Burkhardt:
A Linear Time Algorithm for Finding Minimum Spanning Tree Replacement Edges. CoRR abs/1908.03473 (2019)
[i10]
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Oded Green, James Fox, Jeffrey Young, Jun Shirako, David A. Bader:
Performance Impact of Memory Channels on Sparse and Irregular Algorithms. CoRR abs/1910.03679 (2019)
2018
[j58]
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Adam McLaughlin, David A. Bader:
Accelerating GPU betweenness centrality. Commun. ACM 61(8): 85-92 (2018)
[j57]
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Lluís-Miquel Munguía, Shabbir Ahmed, David A. Bader, George L. Nemhauser, Yufen Shao:
Alternating criteria search: a parallel large neighborhood search algorithm for mixed integer programs. Comput. Optim. Appl. 69(1): 1-24 (2018)
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Eisha Nathan, Geoffrey Sanders, Van Emden Henson, David A. Bader:
Numerically approximating centrality for graph ranking guarantees. J. Comput. Sci. 26: 205-216 (2018)
[j55]
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Eisha Nathan, David A. Bader:
Incrementally updating Katz centrality in dynamic graphs. Soc. Netw. Anal. Min. 8(1): 26 (2018)
[c141]
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Alexander van der Grinten, Elisabetta Bergamini, Oded Green, David A. Bader, Henning Meyerhenke:
Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. ESA 2018: 42:1-42:14
[c140]
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Federico Busato, Oded Green, Nicola Bombieri, David A. Bader:
Hornet: An Efficient Data Structure for Dynamic Sparse Graphs and Matrices on GPUs. HPEC 2018: 1-7
[c139]
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James Fox, Oded Green, Kasimir Gabert, Xiaojing An, David A. Bader:
Fast and Adaptive List Intersections on the GPU. HPEC 2018: 1-7
[c138]
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Oded Green, James Fox, Alex Watkins, Alok Tripathy, Kasimir Gabert, Euna Kim, Xiaojing An, Kumar Aatish, David A. Bader:
Logarithmic Radix Binning and Vectorized Triangle Counting. HPEC 2018: 1-7
[c137]
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Srinivas Aluru, David A. Bader, Paul Medvedev:
Introduction to HiCOMB 2018. IPDPS Workshops 2018: 226
[c136]
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David A. Bader:
Massive-scale Streaming Analytics: Models, Parallelism, & Real-world Applications. SPAA 2018: 193
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David A. Bader, Andrea Kappes, Henning Meyerhenke, Peter Sanders, Christian Schulz, Dorothea Wagner:
Benchmarking for Graph Clustering and Partitioning. Encyclopedia of Social Network Analysis and Mining. 2nd Ed. 2018
[i9]
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Alexander van der Grinten, Elisabetta Bergamini, Oded Green, David A. Bader, Henning Meyerhenke:
Scalable Katz Ranking Computation in Large Static and Dynamic Graphs. CoRR abs/1807.03847 (2018)
2017
[j54]
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Eisha Nathan, Anita Zakrzewska, E. Jason Riedy, David A. Bader:
Local Community Detection in Dynamic Graphs Using Personalized Centrality. Algorithms 10(3): 102 (2017)
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James P. Fairbanks, David A. Bader, Geoffrey D. Sanders:
Spectral partitioning with blends of eigenvectors. J. Complex Networks 5(4): 551-580 (2017)
[j52]
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Lluís-Miquel Munguía, Shabbir Ahmed, David A. Bader, George L. Nemhauser, Vikas Goel, Yufen Shao:
A parallel local search framework for the Fixed-Charge Multicommodity Network Flow problem. Comput. Oper. Res. 77: 44-57 (2017)
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Yang You, Haohuan Fu, David A. Bader, Guangwen Yang:
Designing and implementing a heuristic cross-architecture combination for graph traversal. J. Parallel Distributed Comput. 108: 95-105 (2017)
[j50]
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Zhihui Du, Rong Ge, Victor W. Lee, Richard W. Vuduc, David A. Bader, Ligang He:
Modeling the Power Variability of Core Speed Scaling on Homogeneous Multicore Systems. Sci. Program. 2017: 8686971:1-8686971:13 (2017)
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David A. Bader:
Editor's Note. IEEE Trans. Parallel Distributed Syst. 28(1): 1 (2017)
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David A. Bader:
Editor's Note. IEEE Trans. Parallel Distributed Syst. 28(12): 3328-3329 (2017)
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Eisha Nathan, David A. Bader:
A Dynamic Algorithm for Updating Katz Centrality in Graphs. ASONAM 2017: 149-154
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Anita Zakrzewska, David A. Bader:
Streaming Graph Sampling with Size Restrictions. ASONAM 2017: 282-290
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Eisha Nathan, James P. Fairbanks, David A. Bader:
Ranking in Dynamic Graphs Using Exponential Centrality. COMPLEX NETWORKS 2017: 378-389
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Devavret Makkar, David A. Bader, Oded Green:
Exact and Parallel Triangle Counting in Dynamic Graphs. HiPC 2017: 2-12
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Oded Green, James Fox, Euna Kim, Federico Busato, Nicola Bombieri, Kartik Lakhotia, Shijie Zhou, Shreyas G. Singapura, Hanqing Zeng, Rajgopal Kannan, Viktor K. Prasanna, David A. Bader:
Quickly finding a truss in a haystack. HPEC 2017: 1-7
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Shijie Zhou, Kartik Lakhotia, Shreyas G. Singapura, Hanqing Zeng, Rajgopal Kannan, Viktor K. Prasanna, James Fox, Euna Kim, Oded Green, David A. Bader:
Design and implementation of parallel PageRank on multicore platforms. HPEC 2017: 1-6
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Eisha Nathan, Geoffrey Sanders, James P. Fairbanks, Van Emden Henson, David A. Bader:
Graph Ranking Guarantees for Numerical Approximations to Katz Centrality. ICCS 2017: 68-78
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Xinning Hui, Zhihui Du, Jason Liu, Hongyang Sun, Yuxiong He, David A. Bader:
When Good Enough Is Better: Energy-Aware Scheduling for Multicore Servers. IPDPS Workshops 2017: 984-993
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David A. Bader:
Introduction to EMBRACE Workshop. IPDPS Workshops 2017: 1557
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Eisha Nathan, David A. Bader:
Approximating Personalized Katz Centrality in Dynamic Graphs. PPAM (1) 2017: 290-302
[i8]
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Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader:
Exemplar or Matching: Modeling DCJ Problems with Unequal Content Genome Data. CoRR abs/1705.06559 (2017)
2016
[j47]
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David A. Bader:
Evolving MPI+X Toward Exascale. Computer 49(8): 10 (2016)
[j46]
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Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader:
Exemplar or matching: modeling DCJ problems with unequal content genome data. J. Comb. Optim. 32(4): 1165-1181 (2016)
[j45]
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Anita Zakrzewska, David A. Bader:
Tracking local communities in streaming graphs with a dynamic algorithm. Soc. Netw. Anal. Min. 6(1): 65:1-65:16 (2016)
[j44]
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Quan Yang, Zhihui Du, Zhou-Jian Cao, Jian Tao, David A. Bader:
A New Parallel Method for Binary Black Hole Simulations. Sci. Program. 2016: 2360492:1-2360492:14 (2016)
[j43]
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Daniel Dauwe, Eric Jonardi, Ryan D. Friese, Sudeep Pasricha, Anthony A. Maciejewski, David A. Bader, Howard Jay Siegel:
HPC node performance and energy modeling with the co-location of applications. J. Supercomput. 72(12): 4771-4809 (2016)
[j42]
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David A. Bader:
Editor's Note. IEEE Trans. Parallel Distributed Syst. 27(1): 1 (2016)
[c125]
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James P. Fairbanks, Anita Zakrzewska, David A. Bader:
New stopping criteria for spectral partitioning. ASONAM 2016: 25-32
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Anita Zakrzewska, Eisha Nathan, James P. Fairbanks, David A. Bader:
A local measure of community change in dynamic graphs. ASONAM 2016: 349-353
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Anita Zakrzewska, David A. Bader:
Aging data in dynamic graphs: A comparative study. ASONAM 2016: 1055-1062
[c122]
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Oded Green, David A. Bader:
cuSTINGER: Supporting dynamic graph algorithms for GPUs. HPEC 2016: 1-6
[c121]
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Jeremy Kepner, Peter Aaltonen, David A. Bader, Aydin Buluç, Franz Franchetti, John R. Gilbert, Dylan Hutchison, Manoj Kumar, Andrew Lumsdaine, Henning Meyerhenke, Scott McMillan, Carl Yang, John D. Owens, Marcin Zalewski, Timothy G. Mattson, José E. Moreira:
Mathematical foundations of the GraphBLAS. HPEC 2016: 1-9
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Srinivas Aluru, David A. Bader, Ananth Kalyanaraman, Jaroslaw Zola:
HiCOMB Introduction and Committees. IPDPS Workshops 2016: 407
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Vipin Sachdeva, Srinivas Aluru, David A. Bader:
A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. IPDPS Workshops 2016: 453-462
[c118]
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David A. Bader:
GABB 2016 Keynote. IPDPS Workshops 2016: 856
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David A. Bader:
Engineering Algorithms for Computational Biology. Encyclopedia of Algorithms 2016: 628-630
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David A. Bader:
High Performance Algorithm Engineering for Large-Scale Problems. Encyclopedia of Algorithms 2016: 914-918
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David A. Bader:
Sorting Signed Permutations by Reversal (Reversal Distance). Encyclopedia of Algorithms 2016: 2026-2028
[i7]
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Jeremy Kepner, Peter Aaltonen, David A. Bader, Aydin Buluç, Franz Franchetti, John R. Gilbert, Dylan Hutchison, Manoj Kumar, Andrew Lumsdaine, Henning Meyerhenke, Scott McMillan, José E. Moreira, John D. Owens, Carl Yang, Marcin Zalewski, Timothy G. Mattson:
Mathematical Foundations of the GraphBLAS. CoRR abs/1606.05790 (2016)
2015
[j41]
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James P. Fairbanks, Ramakrishnan Kannan, Haesun Park, David A. Bader:
Behavioral clusters in dynamic graphs. Parallel Comput. 47: 38-50 (2015)
[j40]
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David A. Bader:
State of the Journal. IEEE Trans. Computers 64(6): 1506-1508 (2015)
[j39]
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Yunpeng Chai, Zhihui Du, Xiao Qin, David A. Bader:
WEC: Improving Durability of SSD Cache Drives by Caching Write-Efficient Data. IEEE Trans. Computers 64(11): 3304-3316 (2015)
[j38]
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David A. Bader:
Editor's Note. IEEE Trans. Parallel Distributed Syst. 26(1): 1 (2015)
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Adam McLaughlin, Duane Merrill, Michael Garland, David A. Bader:
Parallel Methods for Verifying the Consistency of Weakly-Ordered Architectures. PACT 2015: 51-62
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Anita Zakrzewska, David A. Bader:
A Dynamic Algorithm for Local Community Detection in Graphs. ASONAM 2015: 559-564
[c115]
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Adam McLaughlin, E. Jason Riedy, David A. Bader:
A fast, energy-efficient abstraction for simultaneous breadth-first searches. HPEC 2015: 1-6
[c114]
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Jeremy Kepner, David A. Bader, Aydin Buluç, John R. Gilbert, Timothy G. Mattson, Henning Meyerhenke:
Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. ICCS 2015: 2453-2462
[c113]
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Adam McLaughlin, David A. Bader:
Fast Execution of Simultaneous Breadth-First Searches on Sparse Graphs. ICPADS 2015: 9-18
[c112]
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Sanguthevar Rajasekaran, Srinivas Aluru, David A. Bader:
HiCOMB Introduction and Committees. IPDPS Workshops 2015: 329-330
[c111]
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Daniel Dauwe, Eric Jonardi, Ryan D. Friese, Sudeep Pasricha, Anthony A. Maciejewski, David A. Bader, Howard Jay Siegel:
A Methodology for Co-Location Aware Application Performance Modeling in Multicore Computing. IPDPS Workshops 2015: 434-443
[c110]
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David A. Bader, Yihua Huang, Ananth Kalyanaraman:
ParLearning Keynotes. IPDPS Workshops 2015: 1154-1156
[c109]
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Anita Zakrzewska, David A. Bader:
Fast Incremental Community Detection on Dynamic Graphs. PPAM (1) 2015: 207-217
[i6]
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Jeremy Kepner, David A. Bader, Aydin Buluç, John R. Gilbert, Timothy G. Mattson, Henning Meyerhenke:
Graphs, Matrices, and the GraphBLAS: Seven Good Reasons. CoRR abs/1504.01039 (2015)
[i5]
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James P. Fairbanks, Geoffrey D. Sanders, David A. Bader:
Spectral Partitioning with Blends of Eigenvectors. CoRR abs/1510.04658 (2015)
2014
[j37]
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David A. Bader, Petra Mutzel:
Introduction to Special Issue ALENEX'12. ACM J. Exp. Algorithmics 19(1) (2014)
[j36]
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David A. Bader:
State of the Journal. IEEE Trans. Parallel Distributed Syst. 25(1): 1 (2014)
[c108]
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Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader:
A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. COCOON 2014: 227-238
[c107]
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Adam McLaughlin, E. Jason Riedy, David A. Bader:
Optimizing energy consumption and parallel performance for static and dynamic betweenness centrality using GPUs. HPEC 2014: 1-6
[c106]
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Yang You, David A. Bader, Maryam Mehri Dehnavi:
Designing a Heuristic Cross-Architecture Combination for Breadth-First Search. ICPP 2014: 70-79
[c105]
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Alba Cristina Magalhaes Alves de Melo, Srinivas Aluru, David A. Bader:
HiCOMB Introduction and Committees. IPDPS Workshops 2014: 497-498
[c104]
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Tim Mattson, David A. Bader, Aydin Buluç, John R. Gilbert, Joseph Gonzalez, Jeremy Kepner:
GABB Introduction. IPDPS Workshops 2014: 1135-1137
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Adam McLaughlin, David A. Bader:
Revisiting Edge and Node Parallelism for Dynamic GPU Graph Analytics. IPDPS Workshops 2014: 1396-1406
[c102]
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Oded Green, Lluís-Miquel Munguía, David A. Bader:
Load balanced clustering coefficients. PPAA@PPoPP 2014: 3-10
[c101]
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Robert Campbell McColl, David Ediger, Jason Poovey, Dan Campbell, David A. Bader:
A performance evaluation of open source graph databases. PPAA@PPoPP 2014: 11-18
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Adam McLaughlin, David A. Bader:
Scalable and High Performance Betweenness Centrality on the GPU. SC 2014: 572-583
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David A. Bader, Henning Meyerhenke, Peter Sanders, Christian Schulz, Andrea Kappes, Dorothea Wagner:
Benchmarking for Graph Clustering and Partitioning. Encyclopedia of Social Network Analysis and Mining 2014: 73-82
[i4]
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Tim Mattson, David A. Bader, Jonathan W. Berry, Aydin Buluç, Jack J. Dongarra, Christos Faloutsos, John Feo, John R. Gilbert, Joseph Gonzalez, Bruce Hendrickson, Jeremy Kepner, Charles E. Leiserson, Andrew Lumsdaine, David A. Padua, Stephen W. Poole, Steven P. Reinhardt, Mike Stonebraker, Steve Wallach, Andrew Yoo:
Standards for Graph Algorithm Primitives. CoRR abs/1408.0393 (2014)
2013
[j35]
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E. Jason Riedy, David A. Bader:
Massive streaming data analytics: a graph-based approach. XRDS 19(3): 37-43 (2013)
[j34]
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Xing Liu, Pushkar R. Pande, Henning Meyerhenke, David A. Bader:
PASQUAL: Parallel Techniques for Next Generation Genome Sequence Assembly. IEEE Trans. Parallel Distributed Syst. 24(5): 977-986 (2013)
[j33]
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David Ediger, Karl Jiang, E. Jason Riedy, David A. Bader:
GraphCT: Multithreaded Algorithms for Massive Graph Analysis. IEEE Trans. Parallel Distributed Syst. 24(11): 2220-2229 (2013)
[c99]
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James P. Fairbanks, David Ediger, Robert McColl, David A. Bader, Eric Gilbert:
A statistical framework for streaming graph analysis. ASONAM 2013: 341-347
[c98]
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Robert McColl, Oded Green, David A. Bader:
A new parallel algorithm for connected components in dynamic graphs. HiPC 2013: 246-255
[c97]
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Tim Mattson, David A. Bader, Jonathan W. Berry, Aydin Buluç, Jack J. Dongarra, Christos Faloutsos, John Feo, John R. Gilbert, Joseph Gonzalez, Bruce Hendrickson, Jeremy Kepner, Charles E. Leiserson, Andrew Lumsdaine, David A. Padua, Stephen Poole, Steven P. Reinhardt, Mike Stonebraker, Steve Wallach, Andrew Yoo:
Standards for graph algorithm primitives. HPEC 2013: 1-2
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Oded Green, David A. Bader:
Faster Betweenness Centrality Based on Data Structure Experimentation. ICCS 2013: 399-408
[c95]
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Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader:
Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. ICCS 2013: 561-570
[c94]
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Jaroslaw Zola, David A. Bader, Srinivas Aluru:
HiCOMB Introduction. IPDPS Workshops 2013: 499-500
[c93]
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Zhihui Du, Hongyang Sun, Yuxiong He, Yu He, David A. Bader, Huazhe Zhang:
Energy-Efficient Scheduling for Best-Effort Interactive Services to Achieve High Response Quality. IPDPS 2013: 637-648
[c92]
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David Ediger, David A. Bader:
Investigating Graph Algorithms in the BSP Model on the Cray XMT. IPDPS Workshops 2013: 1638-1645
[c91]
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E. Jason Riedy, David A. Bader:
Multithreaded Community Monitoring for Massive Streaming Graph Data. IPDPS Workshops 2013: 1646-1655
[c90]
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David Ediger, David A. Bader:
Designing Hybrid Architectures for Massive-Scale Graph Analysis. IPDPS Workshops 2013: 2262-2265
[c89]
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  - conf/kdd/SenatorGMYRPHRBCEJBCGKZBMMWDFWDEILKFCFGJ13
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Ted E. Senator, Henry G. Goldberg, Alex Memory, William T. Young, Brad Rees, Robert Pierce, Daniel Huang, Matthew Reardon, David A. Bader, Edmond Chow, Irfan A. Essa, Joshua Jones, Vinay Bettadapura, Duen Horng Chau, Oded Green, Oguz Kaya, Anita Zakrzewska, Erica Briscoe, Rudolph L. Mappus IV, Robert McColl, Lora Weiss, Thomas G. Dietterich, Alan Fern, Weng-Keen Wong, Shubhomoy Das, Andrew Emmott, Jed Irvine, Jay Yoon Lee, Danai Koutra, Christos Faloutsos, Daniel D. Corkill, Lisa Friedland, Amanda Gentzel, David D. Jensen:
Detecting insider threats in a real corporate database of computer usage activity. KDD 2013: 1393-1401
[c88]
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Anita Zakrzewska, David A. Bader:
Measuring the Sensitivity of Graph Metrics to Missing Data. PPAM (1) 2013: 783-792
[c87]
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  - conf/socialcom/GreenB13
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Oded Green, David A. Bader:
Faster Clustering Coefficient Using Vertex Covers. SocialCom 2013: 321-330
[e5]
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  - conf/dimacs/2012
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David A. Bader, Henning Meyerhenke, Peter Sanders, Dorothea Wagner:
Graph Partitioning and Graph Clustering, 10th DIMACS Implementation Challenge Workshop, Georgia Institute of Technology, Atlanta, GA, USA, February 13-14, 2012. Proceedings. Contemporary Mathematics 588, American Mathematical Society 2013, ISBN 978-0-8218-9038-7 [contents]
[i3]
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Shel Swenson, Yogesh Simmhan, Viktor K. Prasanna, Manish Parashar, E. Jason Riedy, David A. Bader, Richard W. Vuduc:
Sustainable Software Development for Next-Gen Sequencing (NGS) Bioinformatics on Emerging Platforms. CoRR abs/1309.1828 (2013)
[i2]
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Robert McColl, David Ediger, Jason Poovey, Dan Campbell, David A. Bader:
A Brief Study of Open Source Graph Databases. CoRR abs/1309.2675 (2013)
2012
[j32]
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David A. Bader, Philippas Tsigas:
ACM journal on experimental algorithmics special issue on multicore algorithms. ACM J. Exp. Algorithmics 17(1) (2012)
[j31]
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Yunpeng Chai, Zhihui Du, David A. Bader, Xiao Qin:
Efficient Data Migration to Conserve Energy in Streaming Media Storage Systems. IEEE Trans. Parallel Distributed Syst. 23(11): 2081-2093 (2012)
[c86]
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E. Jason Riedy, Henning Meyerhenke, David Ediger, David A. Bader:
Parallel community detection for massive graphs. Graph Partitioning and Graph Clustering 2012: 207-222
[c85]
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Lluís-Miquel Munguía, David A. Bader, Eduard Ayguadé:
Task-based parallel breadth-first search in heterogeneous environments. HiPC 2012: 1-10
[c84]
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David Ediger, Robert McColl, E. Jason Riedy, David A. Bader:
STINGER: High performance data structure for streaming graphs. HPEC 2012: 1-5
[c83]
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E. Jason Riedy, Henning Meyerhenke, David A. Bader, David Ediger, Timothy G. Mattson:
Analysis of streaming social networks and graphs on multicore architectures. ICASSP 2012: 5337-5340
[c82]
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Oded Green, Robert McColl, David A. Bader:
GPU merge path: a GPU merging algorithm. ICS 2012: 331-340
[c81]
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David A. Bader:
HCW 2012 Keynote Talk: Analyzing massive data using heterogeneous computing. IPDPS Workshops 2012: 6
[c80]
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Mark J. Clement, Quinn Snell, Srinivas Aluru, David A. Bader:
HiCOMB Introduction. IPDPS Workshops 2012: 663-664
[c79]
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E. Jason Riedy, David A. Bader, Henning Meyerhenke:
Scalable Multi-threaded Community Detection in Social Networks. IPDPS Workshops 2012: 1619-1628
[c78]
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Jussara Marandola, Stéphane Louise, Loïc Cudennec, Jean-Thomas Acquaviva, David A. Bader:
Enhancing Cache Coherent Architectures with access patterns for embedded manycore systems. ISSoC 2012: 1-7
[c77]
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Oded Green, Robert McColl, David A. Bader:
A Fast Algorithm for Streaming Betweenness Centrality. SocialCom/PASSAT 2012: 11-20
[e4]
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David A. Bader, Petra Mutzel:
Proceedings of the 14th Meeting on Algorithm Engineering & Experiments, ALENEX 2012, The Westin Miyako, Kyoto, Japan, January 16, 2012. SIAM / Omnipress 2012, ISBN 978-1-61197-212-2 [contents]
2011
[j30]
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Seunghwa Kang, David Ediger, David A. Bader:
Algorithm Engineering Challenges in Multicore and Manycore Systems. it Inf. Technol. 53(6): 266-273 (2011)
[j29]
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David A. Bader, David R. Kaeli, Volodymyr V. Kindratenko:
Guest Editor's Introduction: Special Issue on High-Performance Computing with Accelerators. IEEE Trans. Parallel Distributed Syst. 22(1): 3-6 (2011)
[c76]
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Wenjie Liu, Zhihui Du, Yu Xiao, David A. Bader, Chen Xu:
A Waterfall Model to Achieve Energy Efficient Tasks Mapping for Large Scale GPU Clusters. IPDPS Workshops 2011: 82-92
[c75]
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Ananth Kalyanaraman, Srinivas Aluru, David A. Bader:
HiCOMB Introduction. IPDPS Workshops 2011: 426-427
[c74]
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David Ediger, E. Jason Riedy, David A. Bader, Henning Meyerhenke:
Tracking Structure of Streaming Social Networks. IPDPS Workshops 2011: 1691-1699
[c73]
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E. Jason Riedy, Henning Meyerhenke, David Ediger, David A. Bader:
Parallel Community Detection for Massive Graphs. PPAM (1) 2011: 286-296
[p5]
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  - books/siam/11/BaderHM11
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David A. Bader, Christine E. Heitsch, Kamesh Madduri:
Large-Scale Network Analysis. Graph Algorithms in the Language of Linear Algebra 2011: 253-285
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Jeremy Kepner, David A. Bader, Robert Bond, Nadya T. Bliss, Christos Faloutsos, Bruce Hendrickson, John R. Gilbert, Eric Robinson:
Fundamental Questions in the Analysis of Large Graphs. Graph Algorithms in the Language of Linear Algebra 2011: 353-357
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David A. Bader, Guojing Cong:
Graph Algorithms. Encyclopedia of Parallel Computing 2011: 796-805
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Guojing Cong, David A. Bader:
Hybrid Programming With SIMPLE. Encyclopedia of Parallel Computing 2011: 851-860
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David A. Bader, Guojing Cong:
Spanning Tree, Minimum Weight. Encyclopedia of Parallel Computing 2011: 1870-1877
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David A. Bader, Guojing Cong:
SWARM: A Parallel Programming Framework for Multicore Processors. Encyclopedia of Parallel Computing 2011: 1966-1971
[i1]
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Mingyu Chen, David A. Bader, Seunghwa Kang:
On the random access performance of Cell Broadband Engine with graph analysis application. CoRR abs/1105.5881 (2011)
2010
[c72]
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Zhihui Du, Zhaoming Yin, Wenjie Liu, David A. Bader:
On accelerating iterative algorithms with CUDA: A case study on Conditional Random Fields training algorithm for biological sequence alignment. BIBM Workshops 2010: 543-548
[c71]
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David A. Bader:
Analyzing Massive Social Networks Using Multicore and Multithreaded Architectures. Facing the Multicore-Challenge 2010: 1
[c70]
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David Ediger, Karl Jiang, E. Jason Riedy, David A. Bader, Courtney D. Corley, Robert M. Farber, William N. Reynolds:
Massive Social Network Analysis: Mining Twitter for Social Good. ICPP 2010: 583-593
[c69]
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David A. Bader:
Message from general chair. IPDPS 2010: 1-2
[c68]
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Zhihui Du, Zhaoming Yin, David A. Bader:
A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA. IPDPS Workshops 2010: 1-8
[c67]
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David Ediger, Karl Jiang, E. Jason Riedy, David A. Bader:
Massive streaming data analytics: A case study with clustering coefficients. IPDPS Workshops 2010: 1-8
[c66]
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Seunghwa Kang, David A. Bader:
Large scale complex network analysis using the hybrid combination of a MapReduce cluster and a highly multithreaded system. IPDPS Workshops 2010: 1-8
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George Karypis, Srinivas Aluru, David A. Bader:
Message from the workshop chairs. IPDPS Workshops 2010: 1-2
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Vipin Sachdeva, Michael Kistler, David A. Bader:
Evaluating Cell/B.E software cache for ClustalW. ISCAS 2010: 3793-3796
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Virat Agarwal, Fabrizio Petrini, Davide Pasetto, David A. Bader:
Scalable Graph Exploration on Multicore Processors. SC 2010: 1-11
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Virat Agarwal, David A. Bader:
Designing Fast Fourier Transform for the IBM Cell Broadband Engine. Scientific Computing with Multicore and Accelerators 2010: 151-170
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David A. Bader, Virat Agarwal, Kamesh Madduri, Fabrizio Petrini:
Combinatorial Algorithm Design on the Cell/B.E. Processor. Scientific Computing with Multicore and Accelerators 2010: 195-216
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Jakub Kurzak, David A. Bader, Jack J. Dongarra:
Scientific Computing with Multicore and Accelerators. Chapman and Hall / CRC computational science series, CRC Press / Taylor & Francis 2010, ISBN 978-1-4398-2536-5 [contents]

2000 – 2009

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2009
[j28]
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Virat Agarwal, David A. Bader, Lin Dan, Lurng-Kuo Liu, Davide Pasetto, Michael Perrone, Fabrizio Petrini:
Faster FAST: multicore acceleration of streaming financial data. Comput. Sci. Res. Dev. 23(3-4): 249-257 (2009)
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David A. Bader, Virat Agarwal, Seunghwa Kang:
Computing discrete transforms on the Cell Broadband Engine. Parallel Comput. 35(3): 119-137 (2009)
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Rick Quax, David A. Bader, Peter M. A. Sloot:
Simulating Individual-Based Models of Epidemics in Hierarchical Networks. ICCS (1) 2009: 725-734
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Song Hao, Zhihui Du, David A. Bader, Yin Ye:
A Partition-Merge Based Cache-Conscious Parallel Sorting Algorithm for CMP with Shared Cache. ICPP 2009: 396-403
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Karl Jiang, David Ediger, David A. Bader:
Generalizing k-Betweenness Centrality Using Short Paths and a Parallel Multithreaded Implementation. ICPP 2009: 542-549
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Seunghwa Kang, David A. Bader, Richard W. Vuduc:
Understanding the design trade-offs among current multicore systems for numerical computations. IPDPS 2009: 1-12
[c58]
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Kamesh Madduri, David A. Bader:
Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis. IPDPS 2009: 1-11
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Kamesh Madduri, David Ediger, Karl Jiang, David A. Bader, Daniel G. Chavarría-Miranda:
A faster parallel algorithm and efficient multithreaded implementations for evaluating betweenness centrality on massive datasets. IPDPS 2009: 1-8
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Seunghwa Kang, David A. Bader:
An efficient transactional memory algorithm for computing minimum spanning forest of sparse graphs. PPoPP 2009: 15-24
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Amrita Mathuriya, David A. Bader, Christine E. Heitsch, Stephen C. Harvey:
GTfold: a scalable multicore code for RNA secondary structure prediction. SAC 2009: 981-988
2008
[j26]
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David A. Bader, Srinivas Aluru:
High-performance computational biology. Parallel Comput. 34(11): 613-615 (2008)
[j25]
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David A. Bader, Kamesh Madduri:
A graph-theoretic analysis of the human protein-interaction network using multicore parallel algorithms. Parallel Comput. 34(11): 627-639 (2008)
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David A. Bader:
Petascale Computing for Large-Scale Graph Problems. CISIS 2008: 779
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Song Hao, Zhihui Du, David A. Bader, Man Wang:
A Prediction Based CMP Cache Migration Policy. HPCC 2008: 374-381
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Seunghwa Kang, David A. Bader:
Optimizing JPEG2000 Still Image Encoding on the Cell Broadband Engine. ICPP 2008: 83-90
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David A. Bader, Aparna Chandramowlishwaran, Virat Agarwal:
On the Design of Fast Pseudo-Random Number Generators for the Cell Broadband Engine and an Application to Risk Analysis. ICPP 2008: 520-527
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Virat Agarwal, Lurng-Kuo Liu, David A. Bader:
Financial modeling on the cell broadband engine. IPDPS 2008: 1-12
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David A. Bader, Kamesh Madduri:
SNAP, Small-world Network Analysis and Partitioning: An open-source parallel graph framework for the exploration of large-scale networks. IPDPS 2008: 1-12
[c48]
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David A. Bader, Viktor K. Prasanna:
DOSA: design optimizer for scientific applications. IPDPS 2008: 1-5
[c47]
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David A. Bader, Sulabh Patel:
High performance MPEG-2 software decoder on the cell broadband engine. IPDPS 2008: 1-10
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David A. Bader:
Engineering Algorithms for Computational Biology. Encyclopedia of Algorithms 2008
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David A. Bader:
High Performance Algorithm Engineering for Large-scale Problems. Encyclopedia of Algorithms 2008
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David A. Bader:
Sorting Signed Permutations by Reversal (Reversal Distance). Encyclopedia of Algorithms 2008
2007
[j24]
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Diana H. P. Low, Bharadwaj Veeravalli, David A. Bader:
On the design of high-performance algorithms for aligning multiple protein sequences on mesh-based multiprocessor architectures. J. Parallel Distributed Comput. 67(9): 1007-1017 (2007)
[j23]
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David A. Bader, Virat Agarwal, Kamesh Madduri, Seunghwa Kang:
High performance combinatorial algorithm design on the Cell Broadband Engine processor. Parallel Comput. 33(10-11): 720-740 (2007)
[j22]
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Sagar Dhakal, Majeed M. Hayat, Jorge E. Pezoa, Cundong Yang, David A. Bader:
Dynamic Load Balancing in Distributed Systems in the Presence of Delays: A Regeneration-Theory Approach. IEEE Trans. Parallel Distributed Syst. 18(4): 485-497 (2007)
[c46]
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Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak:
An Experimental Study of A Parallel Shortest Path Algorithm for Solving Large-Scale Graph Instances. ALENEX 2007
[c45]
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Craig A. Stewart, Malinda Lingwall, David A. Bader:
Lecture on Progress toward Petascale Applications in Bioinformatics and Computational Biology. BIBE 2007: 1458
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David A. Bader, Virat Agarwal:
FFTC: Fastest Fourier Transform for the IBM Cell Broadband Engine. HiPC 2007: 172-184
[c43]
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David A. Bader:
Petascale Computing for Large-Scale Graph Problems. IPDPS 2007: 1
[c42]
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David A. Bader, Virat Agarwal, Kamesh Madduri:
On the Design and Analysis of Irregular Algorithms on the Cell Processor: A Case Study of List Ranking. IPDPS 2007: 1-10
[c41]
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David A. Bader, Varun Kanade, Kamesh Madduri:
SWARM: A Parallel Programming Framework for Multicore Processors. IPDPS 2007: 1-8
[c40]
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David A. Bader, Kamesh Madduri:
A Graph-Theoretic Analysis of the Human Protein-Interaction Network Using Multicore Parallel Algorithms. IPDPS 2007: 1-8
[c39]
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David A. Bader, Viktor K. Prasanna:
DOSA: Design Optimizer for Scientific Applications. IPDPS 2007: 1-6
[c38]
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Joseph R. Crobak, Jonathan W. Berry, Kamesh Madduri, David A. Bader:
Advanced Shortest Paths Algorithms on a Massively-Multithreaded Architecture. IPDPS 2007: 1-8
[c37]
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Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman:
Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. IPDPS 2007: 13
[c36]
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Guojing Cong, David A. Bader:
Techniques for Designing Efficient Parallel Graph Algorithms for SMPs and Multicore Processors. ISPA 2007: 137-147
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David A. Bader:
Petascale Computing for Large-Scale Graph Problems. PPAM 2007: 166-169
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David A. Bader, Shiva Kintali, Kamesh Madduri, Milena Mihail:
Approximating Betweenness Centrality. WAW 2007: 124-137
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Guojing Cong, David A. Bader:
Efficient Parallel Graph Algorithms for Multicore and Multiprocessors. Handbook of Parallel Computing 2007
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Kamesh Madduri, John Feo, Guojing Cong, David A. Bader:
Design of Multithreaded Algorithms for Combinatorial Problems. Handbook of Parallel Computing 2007
2006
[j21]
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David A. Bader, Usman Roshan, Alexandros Stamatakis:
Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. Adv. Comput. 68: 128-179 (2006)
[j20]
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Guojing Cong, David A. Bader:
Designing irregular parallel algorithms with mutual exclusion and lock-free protocols. J. Parallel Distributed Comput. 66(6): 854-866 (2006)
[j19]
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David A. Bader, Guojing Cong:
Fast shared-memory algorithms for computing the minimum spanning forest of sparse graphs. J. Parallel Distributed Comput. 66(11): 1366-1378 (2006)
[j18]
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Srinivas Aluru, Nancy M. Amato, David A. Bader:
Editorial: Special Section on High-Performance Computational Biology. IEEE Trans. Parallel Distributed Syst. 17(8): 737-739 (2006)
[c33]
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Kamesh Madduri, David A. Bader, Jonathan W. Berry, Joseph R. Crobak:
Parallel Shortest Path Algorithms for Solving Large-Scale Instances. The Shortest Path Problem 2006: 249-290
[c32]
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David A. Bader, Vaddadi P. Chandu, Mi Yan:
ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony. ICPP 2006: 65-73
[c31]
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David A. Bader, Kamesh Madduri:
Designing Multithreaded Algorithms for Breadth-First Search and st-connectivity on the Cray MTA-2. ICPP 2006: 523-530
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David A. Bader, Kamesh Madduri:
Parallel Algorithms for Evaluating Centrality Indices in Real-world Networks. ICPP 2006: 539-550
[c29]
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Matthew J. Sottile, Vaddadi P. Chandu, David A. Bader:
Performance analysis of parallel programs via message-passing graph traversal. IPDPS 2006
[c28]
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Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman:
M11 - High-performance computing methods for computational genomics. SC 2006: 225
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Srinivas Aluru, Nancy M. Amato, David A. Bader, Suchindra Bhandarkar, Laxmikant V. Kalé, Dan C. Marinescu:
Parallel Computational Biology. Parallel Processing for Scientific Computing 2006: 357-378
2005
[j17]
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David A. Bader, Guojing Cong:
A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). J. Parallel Distributed Comput. 65(9): 994-1006 (2005)
[c27]
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Guojing Cong, David A. Bader:
An Empirical Analysis of Parallel Random Permutation Algorithms ON SMPs. PDCS 2005: 27-34
[c26]
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David A. Bader, Vipin Sachdeva:
A Cache-Aware Parallel Implementation of the Push-Relabel Network Flow Algorithm and Experimental Evaluation of the Gap Relabeling Heuristic. PDCS 2005: 41-48
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David A. Bader, Vipin Sachdeva:
Incorporating life sciences applications in the architectural optimizations of next-generation petaflop-system. CSB Workshops 2005: 83-84
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David A. Bader, Kamesh Madduri:
Design and Implementation of the HPCS Graph Analysis Benchmark on Symmetric Multiprocessors. HiPC 2005: 465-476
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David A. Bader, Guojing Cong, John Feo:
On the Architectural Requirements for Efficient Execution of Graph Algorithms. ICPP 2005: 547-556
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Guojing Cong, David A. Bader:
An Experimental Study of Parallel Biconnected Components Algorithms on Symmetric Multiprocessors (SMPs). IPDPS 2005
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David A. Bader:
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology. WEA 2005: 16-21
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David A. Bader, Manish Parashar, Sridhar Varadarajan, Viktor K. Prasanna:
High Performance Computing - HiPC 2005, 12th International Conference, Goa, India, December 18-21, 2005, Proceedings. Lecture Notes in Computer Science 3769, Springer 2005, ISBN 3-540-30936-5 [contents]
2004
[j16]
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David A. Bader:
Computational biology and high-performance computing. Commun. ACM 47(11): 34-41 (2004)
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David A. Bader, Srinivas Aluru:
Special Issue: High Performance Computational Biology. Concurr. Pract. Exp. 16(9): 817-821 (2004)
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Marc Snir, David A. Bader:
A Framework for Measuring Supercomputer Productivity. Int. J. High Perform. Comput. Appl. 18(4): 417-432 (2004)
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David A. Bader:
An improved, randomized algorithm for parallel selection with an experimental study. J. Parallel Distributed Comput. 64(9): 1051-1059 (2004)
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Mohammed Javeed Zaki, David A. Bader, Johan Montagnat, Concettina Guerra:
Topic 17: High Performance Bioinformatics. Euro-Par 2004: 988
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David A. Bader, Kamesh Madduri:
A Parallel State Assignment Algorithm for Finite State Machines. HiPC 2004: 297-308
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Guojing Cong, David A. Bader:
Lock-Free Parallel Algorithms: An Experimental Study. HiPC 2004: 516-528
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Mehmet F. Su, Ihab El-Kady, David A. Bader, Shawn-Yu Lin:
A Novel FDTD Application Featuring OpenMP-MPI Hybrid Parallelization. ICPP 2004: 373-379
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Guojing Cong, David A. Bader:
The Euler Tour Technique and Parallel Rooted Spanning Tree. ICPP 2004: 448-457
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David A. Bader, Guojing Cong:
A Fast, Parallel Spanning Tree Algorithm for Symmetric Multiprocessors. IPDPS 2004
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David A. Bader, Guojing Cong:
Fast Shared-Memory Algorithms for Computing the Minimum Spanning Forest of Sparse Graphs. IPDPS 2004
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David A. Bader, Ashfaq A. Khokhar:
Proceedings of the ISCA 17th International Conference on Parallel and Distributed Computing Systems, September 15-17, 2004, The Canterbury Hotel, San Francisco, California, USA. ISCA 2004, ISBN 1-880843-52-8 [contents]
2003
[j12]
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Srinivas Aluru, David A. Bader:
Guest Editor's Introduction: Special issue on high-performance computational biology. J. Parallel Distributed Comput. 63(7-8): 671-673 (2003)
2002
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Bernard M. E. Moret, David A. Bader, Tandy J. Warnow:
High-Performance Algorithm Engineering for Computational Phylogenetics. J. Supercomput. 22(1): 99-111 (2002)
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David A. Bader, Sukanya Sreshta, Nina R. Weisse-Bernstein:
Evaluating Arithmetic Expressions Using Tree Contraction: A Fast and Scalable Parallel Implementation for Symmetric Multiprocessors (SMPs) (Extended Abstract). HiPC 2002: 63-78
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David A. Bader, Srinivas Aluru:
Workshop Introduction. IPDPS 2002
2001
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David A. Bader, Rob Pennington:
Applications. Int. J. High Perform. Comput. Appl. 15(2): 181-185 (2001)
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David A. Bader, Bernard M. E. Moret, Mi Yan:
A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. J. Comput. Biol. 8(5): 483-491 (2001)
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Bernard M. E. Moret, David A. Bader, Tandy J. Warnow:
High-Performance Algorithm Engineering for Computational Phylogenetics. International Conference on Computational Science (2) 2001: 1012-1021
[c10]
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Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy J. Warnow, Mi Yan:
A New Implmentation and Detailed Study of Breakpoint Analysis. Pacific Symposium on Biocomputing 2001: 583-594
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David A. Bader, Bernard M. E. Moret, Mi Yan:
A Linear-Time Algorithm for Computing Inversion Distance between Signed Permutations with an Experimental Study. WADS 2001: 365-376
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David A. Bader, Ajith K. Illendula, Bernard M. E. Moret, Nina R. Weisse-Bernstein:
Using PRAM Algorithms on a Uniform-Memory-Access Shared-Memory Architecture. WAE 2001: 129-144
2000
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Rob Pennington, David A. Bader, Barney Maccabe, Patricia A. Kovatch, Stephen L. Scott:
Tutorial A: Design and Analysis of High Performance Clusters. CLUSTER 2000: 1-2
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David A. Bader, Bernard M. E. Moret, Peter Sanders:
Algorithm Engineering for Parallel Computation. Experimental Algorithmics 2000: 1-23

1990 – 1999

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1999
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David A. Bader, Joseph F. JáJá:
SIMPLE: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). J. Parallel Distributed Comput. 58(1): 92-108 (1999)
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David A. Bader:
A New, Architectural Paradigm for High-performance Computing. Parallel Distributed Comput. Pract. 2(2) (1999)
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David A. Bader, Arthur B. Maccabe, Jason R. Mastaler, John K. McIver III, Patricia A. Kovatch:
Design and Analysis of the Alliance/University of New Mexico Roadrunner Linux SMP SuperCluster. IWCC 1999: 9-18
1998
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David R. Helman, Joseph F. JáJá, David A. Bader:
A New Deterministic Parallel Sorting Algorithm with an Experimental Evaluation. ACM J. Exp. Algorithmics 3: 4 (1998)
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David R. Helman, David A. Bader, Joseph F. JáJá:
A Randomized Parallel Sorting Algorithm with an Experimental Study. J. Parallel Distributed Comput. 52(1): 1-23 (1998)
1996
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David A. Bader, David R. Helman, Joseph F. JáJá:
Practical Parallel Algorithms for Personalized Communication and Integer Sorting. ACM J. Exp. Algorithmics 1: 3 (1996)
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David A. Bader, Joseph F. JáJá:
Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. J. Parallel Distributed Comput. 35(2): 173-190 (1996)
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David A. Bader, Joseph F. JáJá, David Harwood, Larry S. Davis:
Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. J. Supercomput. 10(2): 141-168 (1996)
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David A. Bader, Joseph F. JáJá:
Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection. IPPS 1996: 292-301
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David A. Bader, Joseph F. JáJá, David Harwood, Larry S. Davis:
Parallel Algorithms for Image Enhancement and Segmentation by Region Growing with an Experimental Study. IPPS 1996: 414-423
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David R. Helman, David A. Bader, Joseph F. JáJá:
Parallel Algorithms for Personalized Communication and Sorting with an Experimental Study (Extended Abstract). SPAA 1996: 211-222
1995
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David A. Bader, Joseph F. JáJá, Rama Chellappa:
Scalable data parallel algorithms for texture synthesis using Gibbs random fields. IEEE Trans. Image Process. 4(10): 1456-1460 (1995)
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David A. Bader, Joseph F. JáJá:
Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study (Extended Abstract). PPoPP 1995: 123-133

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