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2020 – today
- 2020
[c51]Orion Weller, Jordan Hildebrandt, Ilya Reznik, Christopher Challis, E. Shannon Tass, Quinn Snell, Kevin D. Seppi:
You Don't Have Time to Read This: An Exploration of Document Reading Time Prediction. ACL 2020: 1789-1794- [c50]Yue Kou, Derong Shen, Quinn Snell, Dong Li, Tiezheng Nie, Ge Yu, Shuai Ma:
Efficient Team Formation in Social Networks based on Constrained Pattern Graph. ICDE 2020: 889-900
2010 – 2019
- 2019
- [j22]Matthew B. Ashcraft, Alexander Lemon, David A. Penry, Quinn Snell:
Compiler Optimization of Accelerator Data Transfers. Int. J. Parallel Program. 47(1): 39-58 (2019) - 2017
- [j21]M. Stanley Fujimoto, Anton Suvorov
, Nicholas O. Jensen, Mark J. Clement, Quinn Snell, Seth M. Bybee:
The OGCleaner: filtering false-positive homology clusters. Bioinform. 33(1): 125-127 (2017) - [c49]Masaki Stanley Fujimoto, Paul M. Bodily, Cole A. Lyman, Andrew J. Jacobsen, Quinn Snell, Mark J. Clement:
Modeling Global and local Codon Bias with Deep Language Models. BIBE 2017: 151-156 - [c48]M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. BIBE 2017: 212-216 - [c47]Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. BIBE 2017: 260-265 - [i1]Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. CoRR abs/1709.00164 (2017) - 2016
- [j20]Paul M. Bodily, M. Stanley Fujimoto, Quinn Snell, Dan Ventura, Mark J. Clement:
ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction. Bioinform. 32(1): 17-24 (2016) - 2015
- [j19]Paul M. Bodily, M. Stanley Fujimoto, Cameron Ortega, Nozomu Okuda, Jared C. Price, Mark J. Clement, Quinn Snell:
Heterozygous genome assembly via binary classification of homologous sequence. BMC Bioinform. 16(S-7): S5 (2015) - 2014
- [j18]M. Stanley Fujimoto, Paul M. Bodily, Nozomu Okuda, Mark J. Clement, Quinn Snell:
Effects of error-correction of heterozygous next-generation sequencing data. BMC Bioinform. 15(S-7): S3 (2014) - [c46]Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge:
Haplotype-centered mapping for improved alignments and genetic association studies. BCB 2014: 499-505 - [c45]Matthew Seeley, Mark J. Clement, Christophe G. Giraud-Carrier, Quinn Snell, Paul M. Bodily, Stanley Fujimoto:
A structured approach to ensemble learning for Alzheimer's disease prediction. BCB 2014: 605-606 - 2013
- [j17]Changjin Hong, Nathan L. Clement, Spencer Clement, Saher Sue Hammoud, Douglas T. Carrell, Bradley R. Cairns, Quinn Snell, Mark J. Clement, William Evan Johnson:
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. BMC Bioinform. 14: 337 (2013) - [j16]James D. Jensen, Daniel M. Jensen, Mark J. Clement, Quinn O. Snell:
Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem. BMC Bioinform. 14(S-13): S5 (2013) - [c44]Paul M. Bodily, Mark J. Clement, Quinn Snell, Jared C. Price, Stanley Fujimoto, Nozomu Okuda:
Application of a MAX-CUT Heuristic to the Contig Orientation Problem in Genome Assembly. BCB 2013: 476 - [c43]Jared C. Price, Judson Ward, Joshua Udall, Quinn Snell, Mark J. Clement:
Identification and correction of substitution errors in Moleculo long reads. BIBE 2013: 1-4 - [c42]Matt Seeley, Mark J. Clement, Quinn Snell:
Feature identification and reduction for improved generalization accuracy in secondary-structure prediction. BIBE 2013: 1-4 - 2012
- [j15]Kenneth Sundberg, Mark J. Clement, Quinn Snell, Dan Ventura, Michael Whiting, Keith A. Crandall:
Phylogenetic search through partial tree mixing. BMC Bioinform. 13(S-13): S8 (2012) - [c41]Mark J. Clement, Quinn Snell, Srinivas Aluru, David A. Bader:
HiCOMB Introduction. IPDPS Workshops 2012: 663-664 - [c40]Nathan L. Clement, Brent A. Shepherd, Paul M. Bodily, Sukhbat Tumur-Ochir, Younghoon Gim, Quinn Snell, Mark J. Clement, W. Evan Johnson:
Parallel Pair-HMM SNP Detection. IPDPS Workshops 2012: 675-683 - 2011
- [j14]Scott Lloyd, Quinn O. Snell:
Accelerated large-scale multiple sequence alignment. BMC Bioinform. 12: 466 (2011) - [c39]Nathan L. Clement, Mark J. Clement, Quinn Snell, W. Evan Johnson:
Parallel Mapping Approaches for GNUMAP. IPDPS Workshops 2011: 435-443 - [c38]Tobias C. Kerscher, Stefan Müller, Quinn O. Snell, Gus L. W. Hart:
Large-Scale Lattice Gas Monte Carlo Simulations for the Generalized Ising Model. IPDPS 2011: 1234-1241 - 2010
- [j13]Kenneth Sundberg, Mark J. Clement, Quinn Snell:
On the use of cartographic projections in visualizing phylo-genetic tree space. Algorithms Mol. Biol. 5: 26 (2010) - [j12]Nathan L. Clement, Quinn Snell, Mark J. Clement, Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson:
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. Bioinform. 26(1): 38-45 (2010) - [j11]Kendell Clement, Nathaniel Gustafson, Amanda Berbert, Hyrum Carroll, Christopher Merris, Ammon Olsen, Mark J. Clement, Quinn Snell, Jared Allen, Randall J. Roper:
PathGen: a transitive gene pathway generator. Bioinform. 26(3): 423-425 (2010) - [c37]Mike Eagar, Mark J. Clement, Quinn Snell:
Spatially Indexing Sequences using Hashes. BIOCOMP 2010: 811-814 - [c36]Lukas Olson, Mark J. Clement, Quinn Snell:
The Impact of Equally-Optimal Pairwise Alignments. BIOCOMP 2010: 870-872
2000 – 2009
- 2009
- [j10]Hyrum Carroll, Adam R. Teichert, Jonathan Krein, Kenneth Sundberg, Quinn Snell, Mark J. Clement:
An open source phylogenetic search and alignment package. Int. J. Bioinform. Res. Appl. 5(3): 349-364 (2009) - [j9]Scott Lloyd, Quinn Snell:
Hardware Accelerated Sequence Alignment with Traceback. Int. J. Reconfigurable Comput. 2009: 762362:1-762362:10 (2009) - [j8]Scott Lloyd, Quinn Snell:
A packet-switched network architecture for reconfigurable computing. ACM Trans. Embed. Comput. Syst. 9(1): 7:1-7:17 (2009) - [c35]Hyrum Carroll, Mark J. Clement, Quinn Snell, David A. McClellan:
ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties. BIBM 2009: 70-73 - [c34]David Oviatt, Mark J. Clement, Quinn Snell, Kenneth Sundberg, Jared Allen, Randall J. Roper:
Inferring Gene Regulatory Networks from Asynchronous Microarray Data. BIOCOMP 2009: 142-147 - [c33]Timothy O'Connor, Kenneth Sundberg, Hyrum Carroll, Mark J. Clement, Quinn Snell:
Analysis of Long Branch Extraction. BIOCOMP 2009: 489-495 - [c32]Kenneth Sundberg, Mark J. Clement, Quinn Snell:
Visualizing Phylogenetic Treespace Using Cartographic Projections. WABI 2009: 321-332 - 2008
- [j7]Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell:
Parsimony accelerated Maximum Likelihood searches. Int. J. Comput. Biol. Drug Des. 1(1): 74-87 (2008) - [c31]Kenneth Sundberg, Daniel Ence, Daniel Wilcox, Quinn Snell, Mark J. Clement:
Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data. BIOCOMP 2008: 68-71 - [c30]Kenneth Sundberg, Hyrum Carroll, Quinn Snell, Mark J. Clement:
Incomparability of Results Between Phylogenetic Search Programs. BIOCOMP 2008: 81-84 - [c29]Scott Lloyd, Quinn Snell:
Qnet: A Modular Architecture for Reconfigurable Computing. ERSA 2008: 259-265 - [c28]Scott Lloyd, Quinn Snell:
Sequence Alignment with Traceback on Reconfigurable Hardware. ReConFig 2008: 259-264 - 2007
- [j6]Hyrum Carroll, Wesley A. Beckstead, Timothy O'Connor, Mark T. W. Ebbert, Mark J. Clement, Quinn Snell, David A. McClellan:
DNA reference alignment benchmarks based on tertiary structure of encoded proteins. Bioinform. 23(19): 2648-2649 (2007) - [j5]Hyrum Carroll, Perry G. Ridge, Mark J. Clement, Quinn Snell:
Phylogenies scores for exhaustive searches and parsimony scores searches. Int. J. Bioinform. Res. Appl. 3(4): 493-503 (2007) - [c27]Kenneth Sundberg, Timothy O'Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell:
Using Parsimony to Guide Maximum Likelihood Searches. BIBE 2007: 774-779 - [c26]Neha Rungta, Hyrum Carroll, Eric G. Mercer, Randall J. Roper, Mark J. Clement, Quinn Snell:
Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs. FMCAD 2007: 216-219 - 2006
- [j4]Jesse Mecham, Mark J. Clement, Quinn Snell, Todd Freestone, Kevin D. Seppi, Keith A. Crandall:
Jumpstarting phylogenetic analysis. Int. J. Bioinform. Res. Appl. 2(1): 19-35 (2006) - [c25]Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell:
Large Grain Size Stochastic Optimization Alignment. BIBE 2006: 127-134 - 2005
- [c24]David Wingate, Nathaniel Powell, Quinn Snell, Kevin D. Seppi:
Prioritized Multiplicative Schwarz Procedures for Solving Linear Systems. IPDPS 2005 - 2004
- [c23]Casey T. Deccio, Mark J. Clement, Quinn Snell:
A Survivable Multi-agent Approach to Network Routing. Communications in Computing 2004: 9-13 - [c22]Robert Ball, Mark J. Clement, Feng Huang, Quinn Snell, Casey T. Deccio:
Aggressive telecommunications overbooking ratios. IPCCC 2004: 31-38 - 2002
- [c21]Quinn Snell, Kevin Tew, Joseph J. Ekstrom, Mark J. Clement:
An Enterprise-Based Grid Resource Management System. HPDC 2002: 83- - [c20]Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall:
TCS: Estimating Gene Genealogies. IPDPS 2002 - [c19]Quinn Snell, Mark J. Clement, David B. Jackson:
Preemption Based Backfill. JSSPP 2002: 24-37 - 2001
- [j3]André Turgeon, Quinn Snell, Mark J. Clement:
Object Placement Using Performance Surfaces. Clust. Comput. 4(3): 263-273 (2001) - [c18]John Jardine, Quinn Snell, Mark J. Clement:
Livelock Avoidance for Meta-Schedulers. HPDC 2001: 141-146 - [c17]David B. Jackson, Brian D. Haymore, Julio C. Facelli, Quinn Snell:
Improving Cluster Utilization through Set Based Allocation Policies. ICPP Workshops 2001: 355-360 - [c16]David B. Jackson, Heather L. Jackson, Quinn Snell:
Simulation Based HPC Workload Analysis. IPDPS 2001: 47 - [c15]David B. Jackson, Quinn Snell, Mark J. Clement:
Core Algorithms of the Maui Scheduler. JSSPP 2001: 87-102 - [c14]Ty van den Akker, Quinn Snell, Mark J. Clement:
The YGuard access control model: set-based access control. SACMAT 2001: 75-84 - 2000
- [c13]André Turgeon, Quinn Snell, Mark J. Clement:
Application Placement using Performance Surfaces. HPDC 2000: 229-236 - [c12]Quinn Snell, Mark J. Clement, David B. Jackson, Chad Gregory:
The Performance Impact of Advance Reservation Meta-scheduling. JSSPP 2000: 137-153 - [c11]Quinn Snell, Michael Whiting, Mark J. Clement, David McLaughlin:
Parallel Phylogenetic Inference. SC 2000: 35
1990 – 1999
- 1999
- [j2]Quinn Snell, Glenn Judd, Mark J. Clement:
The DOGMA Approach to Parallel and Distributed Computing. Parallel Distributed Comput. Pract. 2(2) (1999) - [c10]Shuling Yu, Mark J. Clement, Quinn Snell, Bryan S. Morse:
Parallel Algorithm and Processor Selection Based on Fuzzy Logic. HPCN Europe 1999: 440-449 - [c9]Kevin Butler, Mark J. Clement, Quinn Snell:
A Performance Broker for CORBA. HPDC 1999: 19-26 - [c8]Mark J. Clement, Quinn Snell, Glenn Judd, Michael Whiting:
High Performance Phylogenetic Inference. HPDC 1999: 335-336 - [c7]Mark J. Clement, Quinn Snell, Glenn Judd:
High Performance Computing for the Masses. IPPS/SPDP Workshops 1999: 781-796 - [c6]Glenn Judd, Mark J. Clement, Quinn Snell, Vladimir Getov:
Design Issues for Efficient Implementation of MPI in Java. Java Grande 1999: 58-65 - [c5]Mark J. Clement, Quinn Snell, David B. Jackson, David Ashton:
High Performance Scheduling for Windows NT. PDPTA 1999: 525-531 - 1998
- [j1]Glenn Judd, Mark J. Clement, Quinn Snell:
DOGMA: distributed object group metacomputing architecture. Concurr. Pract. Exp. 10(11-13): 977-983 (1998) - [c4]Glenn Judd, Mark J. Clement, Quinn Snell:
The DOGMA Approach to High-Utilization Supercomputing. HPDC 1998: 64-70 - 1997
- [c3]Quinn Snell, John L. Gustafson:
Parallel Hierarchical Global Illumination. HPDC 1997: 12-19 - 1996
- [c2]Quinn Snell, John L. Gustafson:
An Analytical Model of the HINT Performance Metric. SC 1996: 19 - 1995
- [c1]John L. Gustafson, Quinn Snell:
HINT: A new way to measure computer performance. HICSS (2) 1995: 392-401
Coauthor Index
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