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2020 – today
- 2023
[j60]Severin Kohler
, Diego Boscá, Florian Kärcher, Birger Haarbrandt, Manuel Prinz, Michael Marschollek, Roland Eils:
Eos and OMOCL: Towards a seamless integration of openEHR records into the OMOP Common Data Model. J. Biomed. Informatics 144: 104437 (2023)- [j59]Matthieu-P. Schapranow, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils:
Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards. SN Comput. Sci. 4(4): 358 (2023) - [c70]Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba:
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI 2023 - [c69]Armin Müller, Lara-Sophie Christmann, Severin Kohler, Roland Eils, Fabian Prasser:
Machine Learning for Medical Data Integration. MIE 2023: 691-695 - [c68]Andre Vauvelle, Benjamin Wild, Roland Eils, Spiros C. Denaxas:
Differentiable sorting for censored time-to-event data. NeurIPS 2023 - [i1]Andre Vauvelle, Benjamin Wild, Sera Aylin Cakiroglu, Roland Eils, Spiros C. Denaxas:
Diffsurv: Differentiable sorting for censored time-to-event data. CoRR abs/2304.13594 (2023) - 2022
- [c67]Hans-Ulrich Prokosch, Thomas Bahls, Martin Bialke, Jürgen Eils, Christian Fegeler, Julian Gründner, Birger Haarbrandt, Christopher Hampf, Wolfgang Hoffmann, Hauke Hund, Marvin O. Kampf, Lorenz A. Kapsner, Piotr Kasprzak, Oliver Kohlbacher, Dagmar Krefting, Jonathan Mang, Michael Marschollek, Sebastian Mate, Armin Müller, Fabian Prasser, Julian Sass, Sebastian C. Semler, Holger Stenzhorn, Sylvia Thun, Sven Zenker, Roland Eils:
The COVID-19 Data Exchange Platform of the German University Medicine. MIE 2022: 674-678 - 2021
- [j58]Gerhard Mayer, Wolfgang Müller, Karin Schork, Julian Uszkoreit, Andreas Weidemann, Ulrike Wittig, Maja Rey, Christian Quast, Janine Felden, Frank Oliver Glöckner, Matthias Lange, Daniel Arend, Sebastian Beier, Astrid Junker, Uwe Scholz, Danuta Schüler, Hans A. Kestler, Daniel Wibberg, Alfred Pühler, Sven Twardziok, Jürgen Eils, Roland Eils, Steve Hoffmann, Martin Eisenacher, Michael Turewicz:
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. Briefings Bioinform. 22(5) (2021) - [j57]Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow:
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22(6) (2021) - [j56]Florian Borchert, Andreas Mock, Aurelie Tomczak, Jonas Hügel, Samer Alkarkoukly, Alexander Knurr, Anna-Lena Volckmar, Albrecht Stenzinger, Peter Schirmacher, Jürgen Debus, Dirk Jäger, Thomas Longerich, Stefan Fröhling, Roland Eils, Nina Bougatf, Ulrich Sax, Matthieu-P. Schapranow:
Knowledge bases and software support for variant interpretation in precision oncology. Briefings Bioinform. 22(6) (2021) - [c66]Richard Henkenjohann, Benjamin Bergner, Florian Borchert, Nina Bougatf, Hauke Hund, Roland Eils, Matthieu-P. Schapranow:
An Engineering Approach Towards Multi-site Virtual Molecular Tumor Board Software. IHAW 2021: 156-170 - 2020
- [j55]Soeren Lukassen, Foo Wei Ten, Lukás Adam, Roland Eils, Christian Conrad:
Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders. Nat. Mach. Intell. 2(12): 800-809 (2020) - [j54]Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo:
The evolutionary history of 2,658 cancers. Nat. 578(7793): 122-128 (2020) - [c65]Inken Hagestedt, Mathias Humbert, Pascal Berrang, Irina Lehmann, Roland Eils, Michael Backes, Yang Zhang:
Membership Inference Against DNA Methylation Databases. EuroS&P 2020: 509-520 - [c64]Cecilia Mascia, Francesca Frexia, Paolo Uva, Gianluigi Zanetti, Luca Pireddu, Gideon Giacomelli, Christina Jaeger-Schmidt, Aurelie Tomczak, Simon Schumacher, Florian Kraecher, Roland Eils, Silje Ljosland Bakke, Heather Leslie:
The openEHR Genomics Project. MIE 2020: 443-447
2010 – 2019
- 2019
- [j53]Julius Upmeier zu Belzen, Thore Bürgel, Stefan Holderbach, Felix Bubeck, Lukás Adam, Catharina Gandor, Marita Klein, Jan Mathony, Pauline Pfuderer, Lukas Platz, Moritz Przybilla, Max Schwendemann, Daniel Heid, Mareike Daniela Hoffmann, Michael Jendrusch, Carolin Schmelas, Max Waldhauer, Irina Lehmann, Dominik Niopek, Roland Eils:
Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins. Nat. Mach. Intell. 1(5): 225-235 (2019) - [j52]Julius Upmeier zu Belzen, Thore Bürgel, Stefan Holderbach, Felix Bubeck, Lukás Adam, Catharina Gandor, Marita Klein, Jan Mathony, Pauline Pfuderer, Lukas Platz, Moritz Przybilla, Max Schwendemann, Daniel Heid, Mareike Daniela Hoffmann, Michael Jendrusch, Carolin Schmelas, Max Waldhauer, Irina Lehmann, Dominik Niopek, Roland Eils:
Publisher Correction: Leveraging implicit knowledge in neural networks for functional dissection and engineering of proteins. Nat. Mach. Intell. 1(6): 290 (2019) - 2018
- [j51]Gue-Ho Hwang, Jeongbin Park, Kayeong Lim, Sunghyun Kim, Jihyeon Yu, Eunchong Yu, Sang-Tae Kim, Roland Eils, Jin-Soo Kim, Sangsu Bae:
Web-based design and analysis tools for CRISPR base editing. BMC Bioinform. 19(1): 542:1-542:7 (2018) - [j50]Mihai Glont, Tung V. N. Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne, Varun B. Kothamachu, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S. Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob:
BioModels: expanding horizons to include more modelling approaches and formats. Nucleic Acids Res. 46(Database-Issue): D1248-D1253 (2018) - [j49]Sharib Ali, Stefan Wörz, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr:
Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution. NeuroImage 181: 235-251 (2018) - [c63]Pascal Berrang, Mathias Humbert, Yang Zhang, Irina Lehmann, Roland Eils, Michael Backes:
Dissecting Privacy Risks in Biomedical Data. EuroS&P 2018: 62-76 - [c62]Sharib Ali, Markus Axer, Katrin Amunts, Roland Eils, Karl Rohr:
Evaluating local features in high-resolution 3D-PLI data. ISBI 2018: 729-733 - [c61]Sharib Ali, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr:
Scale-bundle spline-based non-rigid registration for handling fissures. ISBI 2018: 762-765 - 2017
- [j48]Stefan M. Kallenberger, Anne L. Unger, Stefan Legewie, Konstantinos Lymperopoulos, Ursula Klingmüller, Roland Eils, Dirk-Peter Herten:
Correlated receptor transport processes buffer single-cell heterogeneity. PLoS Comput. Biol. 13(9) (2017) - [c60]Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz:
Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain. Bildverarbeitung für die Medizin 2017: 268-273 - [c59]Sharib Ali, Karl Rohr, Markus Axer, Katrin Amunts, Roland Eils, Stefan Wörz:
Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart. ISBI 2017: 415-419 - [c58]Sharib Ali, Karl Rohr, Markus Axer, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Stefan Wörz:
Elastic registration of high-resolution 3D PLI data of the human brain. ISBI 2017: 1151-1155 - [c57]Michael Backes, Pascal Berrang, Matthias Bieg, Roland Eils, Carl Herrmann, Mathias Humbert, Irina Lehmann:
Identifying Personal DNA Methylation Profiles by Genotype Inference. IEEE Symposium on Security and Privacy 2017: 957-976 - 2016
- [j47]Sebastian Steinhauser, Nils Kurzawa, Roland Eils, Carl Herrmann:
A comprehensive comparison of tools for differential ChIP-seq analysis. Briefings Bioinform. 17(6): 953-966 (2016) - [j46]Zuguang Gu, Roland Eils, Matthias Schlesner:
HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data. Bioinform. 32(15): 2372-2374 (2016) - [j45]Zuguang Gu, Roland Eils, Matthias Schlesner:
Complex heatmaps reveal patterns and correlations in multidimensional genomic data. Bioinform. 32(18): 2847-2849 (2016) - [j44]Zuguang Gu, Roland Eils, Matthias Schlesner:
gtrellis: an R/Bioconductor package for making genome-level Trellis graphics. BMC Bioinform. 17: 169 (2016) - [j43]Charles Y. Lin, Serap Erkek, Yiai Tong, Linlin Yin, Alexander J. Federation, Marc Zapatka, Parthiv Haldipur, Daisuke Kawauchi, Thomas Risch, Hans-Jörg Warnatz, Barbara C. Worst, Bensheng Ju, Brent A. Orr, Rhamy Zeid, Donald R. Polaski, Maia Segura-Wang, Sebastian M. Waszak, David T. W. Jones, Marcel Kool, Volker Hovestadt, Ivo Buchhalter, Laura Sieber, Pascal Johann, Lukas Chavez, Stefan Gröschel, Marina Ryzhova, Andrey Korshunov, Wenbiao Chen, Victor V. Chizhikov, Kathleen J. Millen, Vyacheslav Amstislavskiy, Hans Lehrach, Marie-Laure Yaspo, Roland Eils, Peter Lichter, Jan O. Korbel, Stefan M. Pfister, James E. Bradner, Paul A. Northcott:
Active medulloblastoma enhancers reveal subgroup-specific cellular origins. Nat. 530(7588): 57-62 (2016) - 2015
- [j42]Evgeny Gladilin, Roland Eils:
On the role of spatial phase and phase correlation in vision, illusion, and cognition. Frontiers Comput. Neurosci. 9: 45 (2015) - [j41]Marco Tektonidis, Il-Han Kim, Yi-Chun Chen, Roland Eils, David L. Spector, Karl Rohr:
Non-rigid multi-frame registration of cell nuclei in live cell fluorescence microscopy image data. Medical Image Anal. 19(1): 1-14 (2015) - [j40]Nicholas Nolte, Nils Kurzawa, Roland Eils, Carl Herrmann:
MapMyFlu: visualizing spatio-temporal relationships between related influenza sequences. Nucleic Acids Res. 43(Webserver-Issue): W547-W551 (2015) - [j39]Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr:
Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association. IEEE Trans. Image Process. 24(11): 4122-4136 (2015) - 2014
- [j38]Theresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König:
Estimating the activity of transcription factors by the effect on their target genes. Bioinform. 30(17): 401-407 (2014) - [j37]Zuguang Gu, Lei Gu, Roland Eils, Matthias Schlesner, Benedikt Brors:
circlize implements and enhances circular visualization in R. Bioinform. 30(19): 2811-2812 (2014) - [j36]Rosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König:
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling. BMC Syst. Biol. 8: 56 (2014) - [j35]Marti Bernardo-Faura, Stefan Massen, Christine S. Falk, Nathan R. Brady, Roland Eils:
Data-Derived Modeling Characterizes Plasticity of MAPK Signaling in Melanoma. PLoS Comput. Biol. 10(9) (2014) - [j34]Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König:
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j33]Rosario M. Piro, Ivan Molineris, Ferdinando Di Cunto, Roland Eils, Rainer König:
Disease-gene discovery by integration of 3D gene expression and transcription factor binding affinities. Bioinform. 29(4): 468-475 (2013) - [j32]Moritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils, Rainer König:
SplicingCompass: differential splicing detection using RNA-Seq data. Bioinform. 29(9): 1141-1148 (2013) - [j31]Ujjwal Maulik, Anirban Mukhopadhyay, Malay Bhattacharyya, Lars Kaderali, Benedikt Brors, Sanghamitra Bandyopadhyay, Roland Eils:
Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 10(2): 423-435 (2013) - 2012
- [j30]William J. Godinez, Marko Lampe, Peter Koch, Roland Eils, Barbara Müller, Karl Rohr:
Identifying Virus-Cell Fusion in Two-Channel Fluorescence Microscopy Image Sequences Based on a Layered Probabilistic Approach. IEEE Trans. Medical Imaging 31(9): 1786-1808 (2012) - [c56]Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr:
Tracking Virus Particles in Microscopy Images Using Multi-Frame Association. Bildverarbeitung für die Medizin 2012: 231-236 - [c55]Nathalie Harder, Richa Batra, Sina Gogolin, Nicolle Diessl, Roland Eils, Frank Westermann, Rainer König, Karl Rohr:
Cell Tracking for Automatic Migration and Proliferation Analysis in High-Throughput Screens. Bildverarbeitung für die Medizin 2012: 243-248 - [c54]Astha Jaiswal, William J. Godinez, Roland Eils, Maik Jörg Lehmann, Karl Rohr:
Tracking virus particles in fluorescence microscopy images using two-step multi-frame association. ISBI 2012: 664-667 - 2011
- [j29]Tobias Bauer, Roland Eils, Rainer König:
RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factors. Bioinform. 27(16): 2239-2247 (2011) - [j28]Bettina Knapp, Ilka Rebhan, Anil Kumar, Petr Matula, Narsis Aftab Kiani, Marco Binder, Holger Erfle, Karl Rohr, Roland Eils, Ralf Bartenschlager, Lars Kaderali:
Normalizing for individual cell population context in the analysis of high-content cellular screens. BMC Bioinform. 12: 485 (2011) - [j27]Il-Han Kim, Yi-Chun Chen, David L. Spector, Roland Eils, Karl Rohr:
Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle Motion. IEEE Trans. Image Process. 20(4): 1011-1022 (2011) - [c53]Navid Bazzazzadeh, Benedikt Brors, Roland Eils:
Reconstructing the Stochastic Evolution Diagram of Dynamic Complex Systems. AAAI 2011: 1760-1761 - [c52]Nathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr:
3D Segmentation and Quantification of Mouse Embryonic Stem Cells in Fluorescence Microscopy Images. Bildverarbeitung für die Medizin 2011: 34-38 - [c51]Navid Bazzazzadeh, Benedikt Brors, Roland Eils:
Reconstructing evolutionary modular networks from time series data. FUSION 2011: 1-8 - [c50]Il-Han Kim, Catharina Cadmus, Andrea C. Pfeifer, Ursula Klingmüller, Roland Eils, Karl Rohr:
Quantification of frap experiments in live cell image sequences by combining segmentation and registration. ISBI 2011: 212-215 - [c49]Nathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr:
3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy images. ISBI 2011: 216-219 - [c48]William J. Godinez, Marko Lampe, Roland Eils, Barbara Müller, Karl Rohr:
Tracking multiple particles in fluorescence microscopy images via probabilistic data association. ISBI 2011: 1925-1928 - 2010
- [j26]Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König:
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways. Bioinform. 26(9): 1225-1231 (2010) - [j25]Apichat Suratanee, Ilka Rebhan, Petr Matula, Anil Kumar, Lars Kaderali, Karl Rohr, Ralf Bartenschlager, Roland Eils, Rainer König:
Detecting host factors involved in virus infection by observing the clustering of infected cells in siRNA screening images. Bioinform. 26(18) (2010) - [j24]Svetlana Bulashevska, Alla Bulashevska, Roland Eils:
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information. BMC Bioinform. 11: 46 (2010) - [j23]Kitiporn Plaimas, Roland Eils, Rainer König:
Identifying essential genes in bacterial metabolic networks with machine learning methods. BMC Syst. Biol. 4: 56 (2010) - [c47]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Annelie Wünsche, Jan Ellenberg, Roland Eils, Karl Rohr:
Automatic Analysis of Live Cell Image Sequences to determine Temporal Mitotic Phenotypes. Bildverarbeitung für die Medizin 2010: 81-85
2000 – 2009
- 2009
- [j22]Nora Rieber, Bettina Knapp, Roland Eils, Lars Kaderali:
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens. Bioinform. 25(5): 678-679 (2009) - [j21]Alla Bulashevska, Martin Stein, David Jackson, Roland Eils:
Prediction of small molecule binding property of protein domains with Bayesian classifiers based on Markov chains. Comput. Biol. Chem. 33(6): 457-460 (2009) - [j20]William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequences. Medical Image Anal. 13(2): 325-342 (2009) - [j19]Samuel Bandara, Johannes P. Schlöder, Roland Eils, Hans Georg Bock, Tobias Meyer:
Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model. PLoS Comput. Biol. 5(11) (2009) - [c46]William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy Images. Bildverarbeitung für die Medizin 2009: 207-211 - [c45]William J. Godinez, Marko Lampe, Stefan Wörz, Roland Eils, Barbara Müller, Karl Rohr:
Identifying Fusion Events in Fluorescence Microscopy Images. ISBI 2009: 1167-1170 - [c44]Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König:
Analyzing the regulation of metabolic pathways in human breast cancer. LWA 2009: KDML:111-118 - [c43]Evgeny Gladilin, Roland Eils:
Detection of non-uniform multi-body motion in image time-series using saccades-enhanced phase correlation. Image Processing 2009: 72592D - 2008
- [j18]Jan T. Kim, Roland Eils:
Systems Biology and Artificial Life: Towards Predictive Modeling of Biological Systems. Artif. Life 14(1): 1-2 (2008) - [j17]Hannah Schmidt-Glenewinkel, Ivayla Vacheva, Daniela Hoeller, Ivan Dikic, Roland Eils:
An ultrasensitive sorting mechanism for EGF Receptor Endocytosis. BMC Syst. Biol. 2: 32 (2008) - [j16]Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König:
Machine learning based analyses on metabolic networks supports high-throughput knockout screens. BMC Syst. Biol. 2: 67 (2008) - [j15]Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr:
Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell Nuclei. IEEE Trans. Image Process. 17(4): 493-499 (2008) - [c42]William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image Sequences. Bildverarbeitung für die Medizin 2008: 448-452 - [c41]Petr Matula, Anil Kumar, Ilka Wörz, Nathalie Harder, Holger Erfle, Ralf Bartenschlager, Roland Eils, Karl Rohr:
Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence Microscopy. Bildverarbeitung für die Medizin 2008: 453-457 - [c40]William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Probabilistic tracking of virus particles in fluorescence microscopy images. ISBI 2008: 272-275 - [c39]Evgeny Gladilin, Roland Eils:
Nonlinear elastic model for image registration and soft tissue simulation based on piecewise St. Venant-Kirchhoff material approximation. Image Processing 2008: 69142O - 2007
- [j14]Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer König:
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of Escherichia coli. BMC Bioinform. 8 (2007) - [c38]William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences. Bildverarbeitung für die Medizin 2007: 6-10 - [c37]Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Constantin Kappel, Roland Eils, Karl Rohr:
Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human Cells. Bildverarbeitung für die Medizin 2007: 16-20 - [c36]Evgeny Gladilin, Karl Rohr, Roland Eils:
On Validation of Non-physical Techniques for Elastic Image Registration. Bildverarbeitung für die Medizin 2007: 111-115 - [c35]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr:
Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. Bildverarbeitung für die Medizin 2007: 242-246 - [c34]Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils:
Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell Nuclei. BIRD 2007: 104-118 - [c33]Evgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils:
Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nuclei. CIBCB 2007: 127-134 - [c32]Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr:
Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape Theory. DAGM-Symposium 2007: 497-506 - [c31]William J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr:
Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image Sequences. ISBI 2007: 256-259 - [c30]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr:
Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State Machine. ISBI 2007: 1044-1047 - [c29]Il-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Yi-Chun Chen, David L. Spector, Constantin Kappel, Roland Eils, Karl Rohr:
Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human Cells. ISBI 2007: 1328-1331 - [c28]Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König:
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli. LWA 2007: 55-60 - [c27]Siwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr:
Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape Theory. MDA 2007: 37-46 - [c26]Evgeny Gladilin, Constantin Kappel, Roland Eils:
Motion detection and pattern tracking in microscopical images using phase correlation approach. Image Processing 2007: 65121V - [c25]Il-Han Kim, William J. Godinez, Nathalie Harder, Felipe Mora-Bermúdez, Jan Ellenberg, Roland Eils, Karl Rohr:
Compensation of global movement for improved tracking of cells in time-lapse confocal microscopy image sequences. Image Processing 2007: 65121R - [c24]Stefan Wörz, Constantin Kappel, Roland Eils, Karl Rohr:
Model-based segmentation and quantification of fluorescent bacteria in 3D microscopy live cell images. Image Processing 2007: 651234 - 2006
- [j13]Theodora Manoli, Norbert Gretz, Hermann-Josef Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors:
Group testing for pathway analysis improves comparability of different microarray datasets. Bioinform. 22(20): 2500-2506 (2006) - [j12]Markus Ulrich, Constantin Kappel, Joël Beaudouin, Stefan Hezel, Jochen Ulrich, Roland Eils:
Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy images. Bioinform. 22(21): 2709-2710 (2006) - [j11]Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils:
Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms. BMC Bioinform. 7: 119 (2006) - [j10]Arunachalam Vinayagam, Coral del Val, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai, Rainer König:
GOPET: A tool for automated predictions of Gene Ontology terms. BMC Bioinform. 7: 161 (2006) - [j9]Alla Bulashevska, Roland Eils:
Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains. BMC Bioinform. 7: 298 (2006) - [j8]Roland Eils, Leo Neumann:
Systems Biology and Information Technology (Systembiologie und Informationstechnologie. it Inf. Technol. 48(3): 131-132 (2006) - [j7]Ivayla Vacheva, Roland Eils:
Computational Systems Biology Platforms (Computergestützte Systembiologieplattformen). it Inf. Technol. 48(3): 140-147 (2006) - [j6]Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors:
Argonaute - a database for gene regulation by mammalian microRNAs. Nucleic Acids Res. 34(Database-Issue): 115-118 (2006) - [c23]Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Roland Eils, Karl Rohr:
Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell Nuclei. Bildverarbeitung für die Medizin 2006: 364-368 - [c22]Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr:
Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human Cells. Bildverarbeitung für die Medizin 2006: 374-378 - [c21]Evgeny Gladilin, Roland Eils, Karl Rohr:
3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen Kugelabbildung. Bildverarbeitung für die Medizin 2006: 384-388 - [c20]Vassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr:
Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell Screens. CVPR (1) 2006: 276-283 - [c19]Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr:
Automated recognition of mitotic patterns in fluorescence microscopy images of human cells. ISBI 2006: 1016-1019 - [c18]Julian Mattes, Janna Nawroth, Petra Boukamp, Roland Eils, Karin M. Greulich-Bode:
Analyzing motion and deformation of the cell nucleus for studying co-localizations of nuclear structures. ISBI 2006: 1044-1047 - [c17]Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König:
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms. LWA 2006: 350-355 - [c16]Nathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr:
Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image Sequences. MICCAI (1) 2006: 840-848 - [c15]Siwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr:
Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell Nuclei. MICCAI (1) 2006: 907-914 - [c14]Evgeny Gladilin, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr:
Topological analysis of 3D cell nuclei using finite element template-based spherical mapping. Image Processing 2006: 61444V - 2005
- [j5]Svetlana Bulashevska, Roland Eils:
Inferring genetic regulatory logic from expression data. Bioinform. 21(11): 2706-2713 (2005) - [j4]Falk Schubert, Bernhard Tausch, Stefan Joos, Roland Eils:
CGH-Profiler: Data mining based on genomic aberration profiles. BMC Bioinform. 6: 188 (2005) - [j3]Patrick Warnat, Roland Eils, Benedikt Brors:
Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes. BMC Bioinform. 6: 265 (2005) - 2004
- [j2]Rainer König, Roland Eils:
Gene expression analysis on biochemical networks using the Potts spin model. Bioinform. 20(10): 1500-1505 (2004) - [j1]Arunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai:
Applying Support Vector Machines for Gene ontology based gene function prediction. BMC Bioinform. 5: 116 (2004) - [c13]Dietmar Volz, Martin Eigel, Chaitanya A. Athale, Peter Bastian, Harald Hermann, Constantin Kappel, Roland Eils:
Spatial Modeling and Simulation of Diffusion in Nuclei of Living Cells. CMSB 2004: 161-171 - [c12]Martin Bentele, Roland Eils:
General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in Cells. CMSB 2004: 248-251 - [c11]Juntao Gao, Roland Eils, Daniela Köhler, Irina Solovei, Thomas Cremer, Julian Mattes:
Assessing The Similarity of Spatial Configurations Using Distance Differences and Bending Energy: Application To Chromosomal Interphase Arrangements In HeLa Cell Clones. ISBI 2004: 1400-1403 - 2003
- [c10]Rainer König, Roland Eils:
Gene expression analysis on biochemical networks with the potts spin model. German Conference on Bioinformatics 2003: 69-72 - [c9]Falk Schubert, Jasmin Müller, Björn Fritz, Peter Lichter, Roland Eils:
Understanding the classification of tumors with a support-vector-machine: A case-based explanation scheme. German Conference on Bioinformatics 2003: 123-127 - 2002
- [c8]Marco Weismueller, Rainer König, Roland Eils:
Modelling of Information Flows in Cells. ESM 2002: 413-417 - [c7]Roland Eils:
Machine Learning Approaches for Deciphering Complex Pathomechanisms in Cancer. GI Jahrestagung (Ergänzungsband) 2002: 63-64 - [c6]Julian Mattes, Johannes Fieres, Roland Eils:
Shape-adapted motion model based on thin-plate splines and point clustering for point set registration. Image Processing 2002 - 2001
- [c5]Johannes Fieres, Julian Mattes, Roland Eils:
A Point Set Registration Algorithm Using a Motion Model Based on Thin-Plate Splines and Point Clustering. DAGM-Symposium 2001: 76-83 - [c4]Julian Mattes, Johannes Fieres, Joël Beaudouin, Daniel Gerlich, Jan Ellenberg, Roland Eils:
New Tools for Visualization and Quantification in Dynamic Processes: Application to the Nuclear Envelope Dynamics During Mitosis. MICCAI 2001: 1323-1325 - [c3]Matthias Gebhard, Julian Mattes, Roland Eils:
An Active Contour Model for Segmentation Based on Cubic B-splines and Gradient Vector Flow. MICCAI 2001: 1373-1375
1990 – 1999
- 1996
- [c2]Kurt Sätzler, Cornelius Cremer, Roland Eils:
3D-Bildfolgen zur Auflösungsverbesserung in der Fluoreszenzmikroskopie. DAGM-Symposium 1996: 92-105 - [c1]Harald Bornfleth, Daniele Zink, Kurt Sätzler, Roland Eils, Christoph Cremer:
Modellgestützte Segmentierung von Replikationsdomänen in dreidimensionalen konfokalen Mikroskopiebildern. DAGM-Symposium 1996: 408-419
Coauthor Index
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