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ORCIDJournal of Bioinformatics and Computational Biology, Volume 1
Volume 1, Number 1, April 2003
- Preface. 3-20
- Victor Olman, Dong Xu, Ying Xu:
Cubic: Identification of Regulatory Binding Sites through Data Clustering. 21-40 - Jing Li
, Tao Jiang:
Efficient Inference of Haplotypes from Genotypes on a Pedigree. 41-70 - Michal Ozery-Flato, Ron Shamir:
Two Notes on Genome Rearrangement. 71-94 - Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu:
Raptor: Optimal Protein Threading by Linear Programming. 95-118 - Liping Wei, Russ B. Altman:
Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function. 119-138 - Huiqing Liu, Limsoon Wong:
Data Mining Tools for Biological Sequences. 139-168 - Seth Michelson:
Assessing the Impact of Predictive Biosimulation on Drug Discovery and Development. 169-178 - Vladimir Brusic:
From Immunoinformatics to Immunomics. 179-182 - P. Kearney, P. Thibault:
Bioinformatics Meets Proteomics - Bridging the Gap between Massspectrometry Data Analysis and Cell Biology. 183-200
Volume 1, Number 2, July 2003
- Foreword. 205-230
- Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. 231-252 - Masazumi Takahashi, Fumihiko Matsuda, Nino Margetic, Mark G. Lathrop:
Automated Identification of Single Nucleotide Polymorphismsfrom Sequencing Data. 253-266 - Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou:
Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment. 267-288 - Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose:
Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro. 289-306 - Mathew J. Palakal, Matthew J. Stephens, Snehasis Mukhopadhyay, Rajeev R. Raje, Simon Rhodes:
Identification of Biological Relationships from Text Documentsusing Efficient Computational Methods. 307-342 - Sven Rahmann:
Fast Large Scale Oligonucleotide Selection Using the Longest Common Factor Approach. 343-362 - Jun Ogasawara, Shinichi Morishita:
A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome. 363-386 - Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu:
Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. 387-410 - Alessandro Vullo, Paolo Frasconi:
Prediction of Protein Coarse Contact Maps. 411-431
Volume 1, Number 3, October 2003
- Yuan Liu, Yuhong Wang, Kimberly Folander, Guochun Xie, Richard Blevins:
An Interactive Tool for Extracting Exons and Snp from Genomic Sequence: Isolation of Hcn1 and Hcn3 Ion Channel Genes. 433-446 - Xiwei Wu, T. Gregory Dewey:
Cluster Analysis of Dynamic Parameters of Gene Expression. 447-458 - Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Use of Gene Networks for Identifying and Validating Drug Targets. 459-474 - Gary W. Stuart, Michael W. Berry:
A Comprehensive Whole Genome Bacterial Phylogeny Using Correlated Peptide Motifs Defined in a High Dimensional Vector Space. 475-494 - Harpreet Kaur, G. P. S. Raghava:
Bteval: a Server for Evaluation of beta-turn Prediction Methods. 495-504 - Mounir Errami, Christophe Geourjon, Gilbert Deléage:
Conservation of Amino Acids into Multiple Alignments Involved in Pairwise Interactions in Three-dimensional Protein Structures. 505-520 - Chen-Khong Tham, Chew-Kiat Heng, W. C. Chin:
Predicting Risk of Coronary Artery Disease from Dna Microarray-based Genotyping Using Neural Networks and Other Statistical Analysis Tool. 521-540 - Tero Aittokallio, Markus Kurki, Olli Nevalainen, Tuomas Nikula, Anne West, Riitta Lahesmaa:
Computational Strategies for Analyzing Data in Gene Expression Microarray Experiments. 541-586
Volume 1, Number 4, January 2004
- Brona Brejová, Daniel G. Brown, Tomás Vinar:
Optimal Spaced Seeds for Homologous Coding Regions. 595-610 - Lorraine K. Tanabe, W. John Wilbur:
Generation of a Large Gene/protein Lexicon by Morphological Pattern Analysis. 611-626 - Heng Dai, Bin Tian, Wei D. Zhao, Albert Leung, Simon R. Smith, Jackson S. Wan, Xiang Yao:
Dynamic Integration of Gene Annotation and its Application to Microarray Analysis. 627-646 - Stergios Papadimitriou, Spiridon D. Likothanassis:
Kernel-based Self-organized Maps Trained with Supervised Bias for Gene Expression Data Analysis. 647-680 - Mat Soukup, Jae K. Lee:
Developing Optimal Prediction Models for Cancer Classification Using Gene Expression Data. 681-694 - Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita:
Development of Image Processing Program for Yeast Cell Morphology. 695-710 - See-Kiong Ng, Soon-Heng Tan:
Discovering Protein-protein Interactions. 711-742 - Graziela Miê Peres Lopes, Sandro José de Souza:
Dissecting the Human Spliceosome through Bioinformatics and Proteomics Approaches. 743-750
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