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ORCIDJournal of Integrative Bioinformatics, Volume 13
Volume 13, Number 1, 2016
- Diogo Almeida, Vasco Ariston de Carvalho Azevedo
, Artur Silva, Jan Baumbach:
PetriScape - A plugin for discrete Petri net simulations in Cytoscape. - Kasikrit Damkliang, Pichaya Tandayya, Unitsa Sangket, Ekawat Pasomsub:
Integrated Automatic Workflow for Phylogenetic Tree Analysis Using Public Access and Local Web Services. - Julia Rahman, Md. Nazrul Islam Mondal, Md. Khaled Ben Islam, Md. Al Mehedi Hasan:
Feature Fusion Based SVM Classifier for Protein Subcellular Localization Prediction. - Josch Pauling, Edda Klipp:
Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks. - Richard Röttger:
Clustering of Biological Datasets in the Era of Big Data. - Siomar de Castro Soares, Letícia de Castro Oliveira, Arun Kumar Jaiswal, Vasco Ariston de Carvalho Azevedo:
Genomic Islands: an overview of current software and future improvements.
Volume 13, Number 2, 2016
- Sophia Santos, Isabel Rocha:
Estimation of biomass composition from genomic and transcriptomic information. - Fiorella Cravero, María Jimena Martínez, Gustavo Esteban Vazquez, Mónica Fátima Díaz, Ignacio Ponzoni:
Feature Learning applied to the Estimation of Tensile Strength at Break in Polymeric Material Design.
Volume 13, Number 3, 2016
- Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016. - Michael Hucka, Lucian P. Smith:
SBML Level 3 package: Groups, Version 1 Release 1. - Jacob Beal, Robert Sidney Cox III, Raik Grünberg, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari, Chris J. Myers, Herbert M. Sauro, Anil Wipat:
Synthetic Biology Open Language (SBOL) Version 2.1.0.
Volume 13, Number 4, 2016
- Vladimir N. Babenko, Anatoly O. Bragin, Anastasia M. Spitsina, Irina V. Chadaeva, Elvira R. Galieva, Galina V. Orlova, Irina V. Medvedeva, Yuriy L. Orlov:
Analysis of differential gene expression by RNA-seq data in brain areas of laboratory animals. - Canan Has, Sergey A. Lashin, Alexey V. Kochetov, Jens Allmer:
PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes. - Diogo Almeida, Ida Skov, Jesper Lund, Afsaneh Mohammadnejad, Artur Silva, Fabio Vandin, Qihua Tan, Jan Baumbach, Richard Röttger:
Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and MethylationEPIC data processing. - Alexander Mulik, Valery Novochadov, Alexander Bondarev, Sofya Lipnitskaya, Irina Ulesikova, Yulia Shatyr:
New insights into genotype-phenotype correlation in individuals with different level of general non-specific reactivity of an organism. - Benedikt G. Brink, Annica Seidel, Nils Kleinbölting, Tim W. Nattkemper, Stefan P. Albaum:
Omics Fusion - A Platform for Integrative Analysis of Omics Data. - Qilin Li, Yincong Zhou, Yingmin Jiao, Zhao Zhang, Lin Bai, Li Tong, Xiong Yang, Björn Sommer, Ralf Hofestädt, Ming Chen:
DaTo: an atlas of biological databases and tools. - Gökhan Kovanci, Mehmood Ghaffar, Björn Sommer:
Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios.
Volume 13, Number 5, 2016
- Jens Allmer, Malik Yousef:
Editorial: Computational miRNomics. - Muserref Duygu Saçar Demirci, Mustafa Toprak, Jens Allmer:
A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing Virus Genomes. - Malik Yousef, Waleed Khalifa, Loai AbdAllah:
Ensemble Clustering Classification compete SVM and One-Class classifiers applied on plant microRNAs Data. - Aneesh Kotipalli, Ravikumar Gutti, Chanchal K. Mitra:
Dynamics of miRNA biogenesis and nuclear transport. - Jing Zhang, Hanane Hadj-Moussa, Kenneth B. Storey:
Current progress of high-throughput microRNA differential expression analysis and random forest gene selection for model and non-model systems: an R implementation. - Matthew Kanke, Jeanette Baran-Gale, Jonathan Villanueva, Praveen Sethupathy:
miRquant 2.0: an Expanded Tool for Accurate Annotation and Quantification of MicroRNAs and their isomiRs from Small RNA-Sequencing Data. - Ebru Diler, Turgay Unver, Gökhan Karakülah:
Differential Expression of Hyperhydricity Responsive Peach miRNAs.
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