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Vladimir A. Ivanisenko
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2020 – today
- 2024
- [j25]Evgeniya A. Antropova
, Tamara M. Khlebodarova, Pavel S. Demenkov
, Anastasiia R. Volianskaia, Artur S. Venzel
, Nikita V. Ivanisenko
, Alexandr D. Gavrilenko, Timofey V. Ivanisenko
, Anna V. Adamovskaya, Polina M. Revva, Nikolay A. Kolchanov
, Inna N. Lavrik
, Vladimir A. Ivanisenko
:
Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. J. Integr. Bioinform. 20(3) (2024) - [j24]Yulia E. Uvarova, Pavel S. Demenkov
, Irina N. Kuzmicheva, Artur S. Venzel
, Elena L. Mischenko, Timofey V. Ivanisenko, Vadim M. Efimov, Svetlana V. Bannikova, Asya R. Vasilieva, Vladimir A. Ivanisenko, Sergey E. Peltek:
Accurate noise-robust classification of Bacillus species from MALDI-TOF MS spectra using a denoising autoencoder. J. Integr. Bioinform. 20(3) (2024) - [j23]Haoyu Chao, Shilong Zhang, Yueming Hu, Qingyang Ni, Saige Xin, Liang Zhao, Vladimir A. Ivanisenko, Yuriy L. Orlov
, Ming Chen:
Integrating omics databases for enhanced crop breeding. J. Integr. Bioinform. 20(4) (2024) - 2020
- [j22]Timofey V. Ivanisenko
, Olga V. Saik, Pavel S. Demenkov
, Nikita V. Ivanisenko, Alexander N. Savostyanov
, Vladimir A. Ivanisenko
:
ANDDigest: a new web-based module of ANDSystem for the search of knowledge in the scientific literature. BMC Bioinform. 21-S(11): 228 (2020)
2010 – 2019
- 2019
- [j21]Vladimir A. Ivanisenko
, Pavel S. Demenkov
, Timofey V. Ivanisenko
, Elena L. Mishchenko, Olga V. Saik:
A new version of the ANDSystem tool for automatic extraction of knowledge from scientific publications with expanded functionality for reconstruction of associative gene networks by considering tissue-specific gene expression. BMC Bioinform. 20-S(1): 5-15 (2019) - 2018
- [j20]Elena Yu. Bragina
, Irina A. Goncharova
, Anna F. Garaeva, Evgeniy V. Nemerov, Anastasija A. Babovskaya
, Andrey B. Karpov, Yulia V. Semenova, Irina Z. Zhalsanova
, Densema E. Gomboeva, Olga V. Saik, Olga I. Zolotareva
, Vladimir A. Ivanisenko
, Victor E. Dosenko, Ralf Hofestädt, Maxim B. Freidin
:
Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. J. Integr. Bioinform. 15(4) (2018) - [j19]Tatiana Drevytska
, Roman Morhachov
, Lesya Tumanovska
, Georgiy Portnichenko, Vasyl Nagibin, Oleksiy Boldyriev
, Tatiana Lapikova-Bryhinska
, Veronika Gurianova, Borys Dons'koi
, Maxim B. Freidin
, Vladimir A. Ivanisenko
, Elena Yu. Bragina
, Ralf Hofestädt, Victor E. Dosenko:
shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma. J. Integr. Bioinform. 15(4) (2018) - [j18]Ralf Hofestädt, Vladimir A. Ivanisenko
:
Integrative Analysis of Co-Morbid Multifactorial Diseases. J. Integr. Bioinform. 15(4) (2018) - [j17]Olga V. Saik, Pavel S. Demenkov
, Timofey V. Ivanisenko
, Elena Yu. Bragina
, Maxim B. Freidin
, Victor E. Dosenko, Olga I. Zolotareva
, Evgeniy L. Choynzonov
, Ralf Hofestädt, Vladimir A. Ivanisenko
:
Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. J. Integr. Bioinform. 15(4) (2018) - [j16]Alban Shoshi, Ralf Hofestädt, Olga I. Zolotareva
, Marcel Friedrichs
, Alex Maier, Vladimir A. Ivanisenko
, Victor E. Dosenko, Elena Yu. Bragina
:
GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. J. Integr. Bioinform. 15(4) (2018) - 2017
- [j15]Irina V. Medvedeva
, Pavel S. Demenkov
, Vladimir A. Ivanisenko
:
SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes. J. Bioinform. Comput. Biol. 15(2): 1650044:1-1650044:14 (2017) - [j14]Olga V. Petrovskaya, Evgeny D. Petrovskiy, Inna N. Lavrik, Vladimir A. Ivanisenko
:
A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks. J. Bioinform. Comput. Biol. 15(2): 1650045:1-1650045:14 (2017) - 2015
- [j13]Vladimir A. Ivanisenko
, Olga V. Saik, Nikita V. Ivanisenko, Evgeny S. Tiys
, Timofey V. Ivanisenko
, Pavel S. Demenkov
, Nikolay A. Kolchanov
:
ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst. Biol. 9(S-2): S2 (2015) - [j12]Andrey S. Glotov
, Evgeny S. Tiys
, Elena S. Vashukova
, Vladimir S. Pakin
, Pavel S. Demenkov
, Olga V. Saik, Timofey V. Ivanisenko
, Olga N. Arzhanova
, Elena V. Mozgovaya, Marina S. Zainulina, Nikolay A. Kolchanov
, Vladislav S. Baranov
, Vladimir A. Ivanisenko
:
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome). BMC Syst. Biol. 9(S-2): S4 (2015) - [j11]Irina M. Larina, Lyudmila Kh. Pastushkova, Evgeny S. Tiys
, Kirill S. Kireev, Alexey S. Kononikhin, Natalia L. Starodubtseva, Igor A. Popov
, Marc-Antoine Custaud, Igor V. Dobrokhotov
, Evgeny N. Nikolaev
, Nikolay A. Kolchanov
, Vladimir A. Ivanisenko
:
Permanent proteins in the urine of healthy humans during the Mars-500 experiment. J. Bioinform. Comput. Biol. 13(1): 1540001:1-1540001:17 (2015) - 2014
- [p1]Timofey V. Ivanisenko
, Pavel S. Demenkov
, Vladimir A. Ivanisenko
:
Text Mining on PubMed. Approaches in Integrative Bioinformatics 2014: 161-170 - 2013
- [j10]Björn Sommer, Benjamin Kormeier, Pavel Demenkov
, Patrizio Arrigo
, Klaus Hippe, Özgür Ates, Alexey V. Kochetov, Vladimir A. Ivanisenko
, Nikolay A. Kolchanov
, Ralf Hofestädt:
Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. J. Bioinform. Comput. Biol. 11(1) (2013) - [c2]Konstantin Kozlov
, Nikita Ivanisenko, Vladimir A. Ivanisenko
, Nikolay A. Kolchanov, Maria Samsonova, Alexander M. Samsonov:
Enhanced Differential Evolution Entirely Parallel Method for Biomedical Applications. PaCT 2013: 409-416 - 2012
- [j9]Nicolas Turenne, Evgeny S. Tiys
, Vladimir A. Ivanisenko
, Nikolay Yudin, Elena Ignatieva, Damien Valour, Séverine A. Degrelle, Isabelle Hue
:
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development. BioData Min. 5: 12 (2012) - [j8]Pavel Demenkov
, Timofey V. Ivanisenko
, Nikolay A. Kolchanov
, Vladimir A. Ivanisenko
:
ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem. Silico Biol. 11(3-4): 149-161 (2012) - [j7]Irina V. Medvedeva
, Pavel Demenkov
, Nikolay A. Kolchanov
, Vladimir A. Ivanisenko
:
SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes. Nucleic Acids Res. 40(Database-Issue): 278-283 (2012) - 2010
- [j6]Björn Sommer, Evgeny S. Tiys, Benjamin Kormeier, Klaus Hippe, Sebastian Janowski, Timofey V. Ivanisenko
, Anatoly O. Bragin, Patrizio Arrigo
, Pavel Demenkov
, Alexey V. Kochetov, Vladimir A. Ivanisenko
, Nikolay A. Kolchanov, Ralf Hofestädt:
Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. J. Integr. Bioinform. 7(1) (2010)
2000 – 2009
- 2007
- [j5]Sergey S. Pintus, Eduard S. Fomin, Ivan S. Oshurkov, Vladimir A. Ivanisenko:
Phylogenetic Analysis of the p53 and p63/p73 Gene Families. Silico Biol. 7(3): 319-332 (2007) - [j4]Elena L. Mishchenko, Kirill D. Bezmaternykh, Vitali A. Likhoshvai, Alexander V. Ratushny, Tamara M. Khlebodarova, Natalia Yu. Sournina, Vladimir A. Ivanisenko
, Nikolay A. Kolchanov:
Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. J. Bioinform. Comput. Biol. 5(2b): 593-609 (2007) - [c1]Irina Medvedeva, Pavel Demenkov, Vladimir A. Ivanisenko, Nikolay A. Kolchanov:
Analysis of Protein Functional Site Distribution on Gene Structure. BIOCOMP 2007: 452-455 - 2005
- [j3]Vladimir A. Ivanisenko
, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
:
PDBSite: a database of the 3D structure of protein functional sites. Nucleic Acids Res. 33(Database-Issue): 183-187 (2005) - [j2]Vladimir A. Ivanisenko
, Alexey M. Eroshkin, Nikolay A. Kolchanov
:
WebProAnalyst: an interactive tool for analysis of quantitative structure-activity relationships in protein families. Nucleic Acids Res. 33(Web-Server-Issue): 99-104 (2005) - 2004
- [j1]Vladimir A. Ivanisenko
, Sergey S. Pintus, Dmitry A. Grigorovich, Nikolay A. Kolchanov
:
PDBSiteScan: a program for searching for active, binding and posttranslational modification sites in the 3D structures of proteins. Nucleic Acids Res. 32(Web-Server-Issue): 549-554 (2004)
Coauthor Index
aka: Pavel S. Demenkov
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