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2020 – today
- 2024
[j20]Aleksey Y. Ogurtsov
, Gelio Alves, Alex Rubio, Brendan Joyce, Björn Andersson, Roger Karlsson, Edward R. B. Moore, Yi-Kuo Yu:
MiCId GUI: The Graphical User Interface for MiCId, a Fast Microorganism Classification and Identification Workflow with Accurate Statistics and High Recall. J. Comput. Biol. 31(2): 175-178 (2024)
2010 – 2019
- 2016
- [j19]Gelio Alves, Yi-Kuo Yu:
Confidence assignment for mass spectrometry based peptide identifications via the extreme value distribution. Bioinform. 32(17): 2642-2649 (2016) - 2015
- [j18]Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul:
Log-odds sequence logos. Bioinform. 31(3): 324-331 (2015) - [j17]Gelio Alves, Yi-Kuo Yu:
Mass spectrometry-based protein identification with accurate statistical significance assignment. Bioinform. 31(5): 699-706 (2015) - 2012
- [j16]Aleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo Yu:
CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores. Bioinform. 28(6): 893-894 (2012) - [j15]Aleksandar Stojmirovic, Yi-Kuo Yu:
Information Flow in Interaction Networks II: Channels, Path Lengths, and Potentials. J. Comput. Biol. 19(4): 379-403 (2012) - 2011
- [j14]Aleksandar Stojmirovic, Yi-Kuo Yu:
ppiTrim: constructing non-redundant and up-to-date interactomes. Database J. Biol. Databases Curation 2011 (2011) - [j13]Yi-Kuo Yu, Stephen F. Altschul:
The Complexity of the Dirichlet Model for Multiple Alignment Data. J. Comput. Biol. 18(8): 925-939 (2011) - [j12]Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul:
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison. J. Comput. Biol. 18(8): 941-954 (2011) - [i1]Aleksandar Stojmirovic, Alexander Bliskovsky, Yi-Kuo Yu:
CytoITMprobe: a network information flow plugin for Cytoscape. CoRR abs/1112.0045 (2011) - 2010
- [j11]Aleksandar Stojmirovic, Yi-Kuo Yu:
Robust and accurate data enrichment statistics via distribution function of sum of weights. Bioinform. 26(21): 2752-2759 (2010) - [j10]Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul:
Compositional Adjustment of Dirichlet Mixture Priors. J. Comput. Biol. 17(12): 1607-1620 (2010) - [j9]Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu:
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment. PLoS Comput. Biol. 6(7) (2010)
2000 – 2009
- 2009
- [j8]Aleksandar Stojmirovic, Yi-Kuo Yu:
ITM Probe: analyzing information flow in protein networks. Bioinform. 25(18): 2447-2449 (2009) - [j7]Aleksandar Stojmirovic, Yi-Kuo Yu:
Geometric Aspects of Biological Sequence Comparison. J. Comput. Biol. 16(4): 579-610 (2009) - 2008
- [c1]Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu:
The effectiveness of position- and composition-specific gap costs for protein similarity searches. ISMB 2008: 15-23 - 2007
- [j6]Aleksandar Stojmirovic, Yi-Kuo Yu:
Information Flow in Interaction Networks. J. Comput. Biol. 14(8): 1115-1143 (2007) - 2005
- [j5]Yi-Kuo Yu, Stephen F. Altschul:
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. Bioinform. 21(7): 902-911 (2005) - [j4]Gelio Alves, Yi-Kuo Yu:
Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics. Bioinform. 21(19): 3726-3732 (2005) - 2004
- [j3]Teresa M. Przytycka, Yi-Kuo Yu:
Scale-free networks versus evolutionary drift. Comput. Biol. Chem. 28(4): 257-264 (2004) - 2002
- [j2]Yi-Kuo Yu, Ralf Bundschuh, Terence Hwa:
Hybrid alignment: high-performance with universal statistics. Bioinform. 18(6): 864-872 (2002) - 2001
- [j1]Yi-Kuo Yu, Terence Hwa:
Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models. J. Comput. Biol. 8(3): 249-282 (2001)
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