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ORCIDAlfonso Rodríguez-Patón
Alfonso Rodríguez-Patón Aradas
Person information
- affiliation: Technical University of Madrid (UPM), LIA, Madrid, Spain
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2020 – today
- 2023
[j52]Xue Li
, Peifu Han, Wenqi Chen, Changnan Gao, Shuang Wang, Tao Song, Muyuan Niu, Alfonso Rodríguez-Patón:
MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network. Briefings Bioinform. 24(1) (2023)- 2022
- [j51]Shudong Wang, Zhenzhen Du, Mao Ding, Alfonso Rodríguez-Patón, Tao Song:
KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer's disease drug repositions. Appl. Intell. 52(1): 846-857 (2022) - [j50]Shanchen Pang, Ying Zhang, Tao Song, Xudong Zhang, Xun Wang, Alfonso Rodríguez-Patón:
AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug-drug interaction prediction. Briefings Bioinform. 23(1) (2022) - [j49]Xudong Zhang, Gan Wang, Xiangyu Meng, Shuang Wang, Ying Zhang, Alfonso Rodríguez-Patón, Jianmin Wang, Xun Wang:
Molormer: a lightweight self-attention-based method focused on spatial structure of molecular graph for drug-drug interactions prediction. Briefings Bioinform. 23(5) (2022) - 2021
- [j48]Francis George C. Cabarle, Xiangxiang Zeng, Niall Murphy, Tao Song, Alfonso Rodríguez-Patón, Xiangrong Liu:
Neural-like P systems with plasmids. Inf. Comput. 281: 104766 (2021) - [j47]Bosheng Song, Xiangxiang Zeng, Alfonso Rodríguez-Patón:
Monodirectional tissue P systems with channel states. Inf. Sci. 546: 206-219 (2021) - 2020
- [j46]Xiangrong Liu, Zengyan Hong, Juan Liu, Yuan Lin, Alfonso Rodríguez-Patón, Quan Zou, Xiangxiang Zeng:
Computational methods for identifying the critical nodes in biological networks. Briefings Bioinform. 21(2): 486-497 (2020) - [j45]Xiangxiang Zeng, Yinglai Lin, Yuying He, Linyuan Lü, Xiaoping Min, Alfonso Rodríguez-Patón:
Deep Collaborative Filtering for Prediction of Disease Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1639-1647 (2020) - [c34]Shudong Wang, Zhenzhen Du, Mao Ding, Renteng Zhao, Alfonso Rodríguez-Patón, Tao Song:
LDCNN-DTI: A Novel Light Deep Convolutional Neural Network for Drug-Target Interaction Predictions. BIBM 2020: 1132-1136 - [i2]Antonio Prestes García, Alfonso Rodríguez-Patón:
Applying Evolutionary Metaheuristics for Parameter Estimation of Individual-Based Models. CoRR abs/2005.12841 (2020)
2010 – 2019
- 2019
- [j44]Tao Song, Fan Meng, Alfonso Rodríguez-Patón, Pibao Li, Pan Zheng, Xun Wang:
U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images. IEEE Access 7: 166823-166832 (2019) - [j43]Tongmao Ma, Shaohua Hao, Xun Wang, Alfonso Rodríguez-Patón, Shudong Wang, Tao Song:
Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition. IEEE Access 7: 177562-177570 (2019) - [j42]Tao Song, Shanchen Pang, Shaohua Hao, Alfonso Rodríguez-Patón, Pan Zheng:
A Parallel Image Skeletonizing Method Using Spiking Neural P Systems with Weights. Neural Process. Lett. 50(2): 1485-1502 (2019) - [j41]Xuan Zhang, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng:
Meta-Path Methods for Prioritizing Candidate Disease miRNAs. IEEE ACM Trans. Comput. Biol. Bioinform. 16(1): 283-291 (2019) - 2018
- [j40]Xiangxiang Zeng, Jiawei Lin, Chen Lin, Xiangrong Liu, Alfonso Rodríguez-Patón:
Structural Hole Spanner in HumanNet Identifies Disease Gene and Drug targets. IEEE Access 6: 35392-35401 (2018) - [j39]Shanchen Pang, Tong Ding, Alfonso Rodríguez-Patón, Tao Song, Pan Zheng:
A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment. IEEE Access 6: 65548-65556 (2018) - [j38]Matteo Cavaliere, Alfonso Rodríguez-Patón:
Preface. Nat. Comput. 17(4): 759 (2018) - [j37]Tao Song, Alfonso Rodríguez-Patón, Pan Zheng, Xiangxiang Zeng:
Spiking Neural P Systems With Colored Spikes. IEEE Trans. Cogn. Dev. Syst. 10(4): 1106-1115 (2018) - [c33]Hongjie Chen, Xun Wang, Xuan Zhang, Xiangxiang Zeng, Tao Song, Alfonso Rodríguez-Patón:
LncRNA-disease association prediction based on neighborhood information aggregation in neural network. BIBM 2018: 175-178 - [c32]Xiaoshan Yan, Xiangrong Liu, Xiangxiang Zeng, Alfonso Rodríguez-Patón:
An Implementation of Elementary Arithmetic with Virus Machine. Enjoying Natural Computing 2018: 304-317 - 2017
- [j36]Andrei Paun, Alfonso Rodríguez-Patón:
P Systems Simulating Bacterial Conjugation: Universality and Properties. Fundam. Informaticae 153(1-2): 87-103 (2017) - [j35]Xingyi Zhang, Alfonso Rodríguez-Patón Aradas, Xiangxiang Zeng, Tao Song:
Theory and Application of Bio-inspired Intelligence and Methods. J. Univers. Comput. Sci. 23(7): 586-588 (2017) - [j34]David Benes, Alfonso Rodríguez-Patón, Petr Sosík:
Directed evolution of biocircuits using conjugative plasmids and CRISPR-Cas9: design and in silico experiments. Nat. Comput. 16(3): 497-505 (2017) - [c31]Xiangyi Meng, Quan Zou, Alfonso Rodríguez-Patón, Xiangxiang Zeng:
Iteratively collective prediction of disease-gene associations through the incomplete network. BIBM 2017: 1324-1330 - [c30]P. Martín Gutiérrez, Alfonso Rodríguez-Patón:
Simulating multicell populations with an accelerated gro simulator. ECAL 2017: 186-188 - 2016
- [i1]Antonio Prestes García, Alfonso Rodríguez-Patón:
EvoPER - An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast. PeerJ Prepr. 4: e2279 (2016) - 2015
- [j33]David Benes, Petr Sosík, Alfonso Rodríguez-Patón:
An Autonomous In Vivo Dual Selection Protocol for Boolean Genetic Circuits. Artif. Life 21(2): 247-260 (2015) - [c29]Antonio Prestes García, Alfonso Rodríguez-Patón:
BactoSim - An Individual-Based Simulation Environment for Bacterial Conjugation. PAAMS 2015: 275-279 - [c28]Antonio Prestes García, Alfonso Rodríguez-Patón:
A Preliminary Assessment of Three Strategies for the Agent-Based Modeling of Bacterial Conjugation. PACBB 2015: 1-9 - 2014
- [j32]Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík:
DNA strand displacement system running logic programs. Biosyst. 115: 5-12 (2014) - [j31]Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón:
Probabilistic reasoning with a Bayesian DNA device based on strand displacement. Nat. Comput. 13(4): 549-557 (2014) - 2013
- [j30]Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón:
P systems with proteins on membranes characterize PSPACE. Theor. Comput. Sci. 488: 78-95 (2013) - [c27]Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón:
Probabilistic Reasoning with an Enzyme-Driven DNA Device. DNA 2013: 160-173 - 2012
- [j29]Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón:
DNA biosensors that reason. Biosyst. 109(2): 91-104 (2012) - [c26]Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón:
Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement. DNA 2012: 110-122 - [c25]Niall Murphy, Alfonso Rodríguez-Patón:
Distributed Computing with Prokaryotic Immune Systems. ICARIS 2012: 286-288 - 2011
- [j28]Mihai Ionescu, Gheorghe Paun, Mario J. Pérez-Jiménez, Alfonso Rodríguez-Patón:
Spiking Neural P Systems with Several Types of Spikes. Int. J. Comput. Commun. Control 6(4): 647-655 (2011) - [j27]Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón, Manuela Sidoroff:
P Systems with proteins on Membranes: a Survey. Int. J. Found. Comput. Sci. 22(1): 39-53 (2011) - [j26]Petr Sosík, Alfonso Rodríguez-Patón, Ludek Cienciala:
On the Power of Families of Recognizer Spiking Neural P Systems. Int. J. Found. Comput. Sci. 22(1): 75-88 (2011) - [j25]John Jack, Andrei Paun, Alfonso Rodríguez-Patón:
A review of the nondeterministic waiting time algorithm. Nat. Comput. 10(1): 139-149 (2011) - [j24]Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík:
On the scalability of biocomputing algorithms: The case of the maximum clique problem. Theor. Comput. Sci. 412(51): 7075-7086 (2011) - [c24]Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík:
Autonomous Resolution Based on DNA Strand Displacement. DNA 2011: 190-203 - [c23]Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón, John Jack:
Poster: Biochemical signaling: A discrete simulation with memory enhancement. ICCABS 2011: 257 - [c22]Pablo Gómez Esteban, Alfonso Rodríguez-Patón:
Simulating a Rock-Scissors-Paper Bacterial Game with a Discrete Cellular Automaton. IWINAC (2) 2011: 363-370 - 2010
- [j23]Jesús M. Miró Bueno, Alfonso Rodríguez-Patón:
Biomolecular Computing Devices in Synthetic Biology. Int. J. Nanotechnol. Mol. Comput. 2(2): 47-64 (2010) - [c21]Petr Sosík, Alfonso Rodríguez-Patón, Lucie Ciencialová:
Polynomial Complexity Classes in Spiking Neural P Systems. Int. Conf. on Membrane Computing 2010: 348-360 - [c20]Alfonso Rodríguez-Patón, José María Larrea, Iñaki Sainz de Murieta:
Inference with DNA Molecules. UC 2010: 192
2000 – 2009
- 2009
- [j22]Marc García-Arnau, David Pérez, Alfonso Rodríguez-Patón, Petr Sosík:
Spiking Neural P Systems: Stronger Normal Forms. Int. J. Unconv. Comput. 5(5): 411-425 (2009) - [j21]Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón:
On the Hopcroft's minimization technique for DFA and DFCA. Theor. Comput. Sci. 410(24-25): 2424-2430 (2009) - [j20]Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón:
Sequential SNP systems based on min/max spike number. Theor. Comput. Sci. 410(30-32): 2982-2991 (2009) - [c19]Jesús M. Miró Bueno, Alfonso Rodríguez-Patón:
A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme. IWANN (2) 2009: 1170-1177 - [c18]Petr Sosík, Andrei Paun, Alfonso Rodríguez-Patón, David Pérez:
On the Power of Computing with Proteins on Membranes. Workshop on Membrane Computing 2009: 448-460 - [r1]Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón:
Grammar-Guided Genetic Programming. Encyclopedia of Artificial Intelligence 2009: 767-773 - 2008
- [j19]John Jack, Alfonso Rodríguez-Patón, Oscar H. Ibarra, Andrei Paun:
Discrete Nondeterministic Modeling of the Fas Pathway. Int. J. Found. Comput. Sci. 19(5): 1147-1162 (2008) - [j18]Marc García-Arnau, David Pérez, Alfonso Rodríguez-Patón, Petr Sosík:
On the power of elementary features in spiking neural P systems. Nat. Comput. 7(4): 471-483 (2008) - [c17]Oscar H. Ibarra, Andrei Paun, Alfonso Rodríguez-Patón:
Sequentiality Induced by Spike Number in SNP Systems. DNA 2008: 179-190 - [c16]John Jack, Andrei Paun, Alfonso Rodríguez-Patón:
Effects of HIV-1 Proteins on the Fas-Mediated Apoptotic Signaling Cascade: A Computational Study of Latent CD4+ T Cell Activation. Workshop on Membrane Computing 2008: 246-259 - [c15]Andrei Paun, Mihaela Paun, Alfonso Rodríguez-Patón:
Hopcroft's Minimization Technique: Queues or Stacks?. CIAA 2008: 78-91 - 2007
- [j17]Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík:
A P system and a constructive membrane-inspired DNA algorithm for solving the Maximum Clique Problem. Biosyst. 90(3): 687-697 (2007) - [j16]Petr Sosík, Alfonso Rodríguez-Patón:
Membrane computing and complexity theory: A characterization of PSPACE. J. Comput. Syst. Sci. 73(1): 137-152 (2007) - [j15]Marc García-Arnau, Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón:
Initialization method for grammar-guided genetic programming. Knowl. Based Syst. 20(2): 127-133 (2007) - [j14]Javier Andrade Garda, Juan Ares Casal, Rafael García, Juan Pazos, Santiago Rodríguez Yáñez, Alfonso Rodríguez-Patón, Andrés Silva:
Towards a lessons learned system for critical software. Reliab. Eng. Syst. Saf. 92(7): 902-913 (2007) - [j13]Jorge Couchet, Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón:
Crossover and mutation operators for grammar-guided genetic programming. Soft Comput. 11(10): 943-955 (2007) - [j12]Oscar H. Ibarra, Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón, Petr Sosík, Sara Woodworth:
Normal forms for spiking neural P systems. Theor. Comput. Sci. 372(2-3): 196-217 (2007) - [c14]Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón, Petr Sosík:
Towards a Robust Biocomputing Solution of Intractable Problems. DNA 2007: 221-230 - [c13]Marc García-Arnau, Daniel Manrique, Alfonso Rodríguez-Patón:
A Parallel DNA Algorithm Using a Microfluidic Device to Build Scheduling Grids. IWINAC (1) 2007: 193-202 - [c12]Andrei Paun, Alfonso Rodríguez-Patón:
On Flip-Flop Membrane Systems with Proteins. Workshop on Membrane Computing 2007: 414-427 - 2006
- [j11]Daniel Manrique, Juan Rios, Alfonso Rodríguez-Patón:
Evolutionary system for automatically constructing and adapting radial basis function networks. Neurocomputing 69(16-18): 2268-2283 (2006) - [j10]Michael Domaratzki, Petr Sosík, Alfonso Rodríguez-Patón:
Algebraic properties of substitution on trajectories. Theor. Comput. Sci. 369(1-3): 183-196 (2006) - [c11]Petr Sosík, Alfonso Rodríguez-Patón:
P Systems with Active Membranes Characterize PSPACE. DNA 2006: 33-46 - [c10]Hitesh Nagda, Andrei Paun, Alfonso Rodríguez-Patón:
P Systems with Symport/Antiport and Time. Workshop on Membrane Computing 2006: 463-476 - [c9]Marc García-Arnau, Daniel Manrique, J. Ríos, Alfonso Rodríguez-Patón:
Initialization Method for Grammar-Guided Genetic Programming. SGAI Conf. 2006: 32-44 - 2005
- [j9]Gheorghe Paun, Mario J. Pérez-Jiménez, Juan Pazos, Alfonso Rodríguez-Patón:
Symport/Antiport P Systems with Three Objects Are Universal. Fundam. Informaticae 64(1-4): 353-367 (2005) - [j8]Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón:
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem. Soft Comput. 9(9): 679-685 (2005) - [j7]Lucas Ledesma, Daniel Manrique, Alfonso Rodríguez-Patón:
A tissue P system and a DNA microfluidic device for solving the shortest common superstring problem. Soft Comput. 9(9): 691-691 (2005) - [c8]Daniel Manrique, Fernando Márquez, Juan Rios, Alfonso Rodríguez-Patón:
Grammar Based Crossover Operator in Genetic Programming. IWINAC (2) 2005: 252-261 - 2004
- [c7]Lucas Ledesma, Juan Pazos, Alfonso Rodríguez-Patón:
A DNA Algorithm for the Hamiltonian Path Problem Using Microfluidic Systems. Aspects of Molecular Computing 2004: 289-296 - 2003
- [j6]Carlos Martín-Vide, Gheorghe Paun, Juan Pazos, Alfonso Rodríguez-Patón:
Tissue P systems. Theor. Comput. Sci. 296(2): 295-326 (2003) - [c6]Carlos Martín-Vide, Alfonso Rodríguez-Patón:
Restricted Concatenation Inspired by DNA Strand Assembly. Grammars and Automata for String Processing 2003: 403-412 - [c5]Juan Pazos, Alfonso Rodríguez-Patón, Andrés Silva:
Solving SAT in Linear Time with a Neural-Like Membrane System. IWANN (1) 2003: 662-669 - 2002
- [j5]José Luis Maté, Alfonso Rodríguez-Patón, Andrés Silva:
On the Power of P Systems with DNA-Worm-Objects. Fundam. Informaticae 49(1-3): 229-239 (2002) - [c4]Carlos Martín-Vide, Juan Pazos, Gheorghe Paun, Alfonso Rodríguez-Patón:
A New Class of Symbolic Abstract Neural Nets: Tissue P Systems. COCOON 2002: 290-299 - [c3]José Luis Maté, Luis Felipe Paradela, Juan Pazos, Alfonso Rodríguez-Patón, Andrés Silva:
MEGICO: An Intelligent Knowledge Management Methodology. EKAW 2002: 102-107 - 2001
- [j4]Carlos Martín-Vide, Gheorghe Paun, Alfonso Rodríguez-Patón:
On P Systems with Membrane Creation. Comput. Sci. J. Moldova 9(2): 134-145 (2001) - [j3]Andrei Paun, Gheorghe Paun, Alfonso Rodríguez-Patón:
Further Remarks on P Systems with Symport Rules. Sci. Ann. Cuza Univ. 10: 3-18 (2001) - [j2]Alfonso Rodríguez-Patón:
On the Universality of P Systems with Membrane Creation. Bull. EATCS 74: 234 (2001) - 2000
- [j1]Jürgen Dassow, Carlos Martín-Vide, Gheorghe Paun, Alfonso Rodríguez-Patón:
Conditional Concatenation. Fundam. Informaticae 44(4): 353-372 (2000) - [c2]Juan Castellanos, Gheorghe Paun, Alfonso Rodríguez-Patón:
Computing with Membranes: P Systems with Worm-Objects. SPIRE 2000: 65-74
1990 – 1999
- 1999
- [b1]Alfonso Rodríguez-Patón Aradas:
Variantes de la concatenación en computación con ADN. Technical University of Madrid, Spain, 1999 - 1998
- [c1]Juan Castellanos, S. Leiva, Jose Rodrigo, Alfonso Rodríguez-Patón:
Molecular Computation for Genetic Algorithms. Rough Sets and Current Trends in Computing 1998: 91-98
Coauthor Index
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