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2020 – today
- 2024
[j95]Fabian Falck, Xuan Zhu, Sahra Ghalebikesabi
, Matthias Kormaksson, Marc Vandemeulebroecke, Cong Zhang, Ruvie Martin, Stephen Gardiner, Chun Hei Kwok, Dominique M. West, Luis A. Santos, Chengeng Tian, Yu Pang, Aimee Readie, Gregory Ligozio, Kunal K. Gandhi, Thomas E. Nichols, Ann-Marie Mallon, Luke J. Kelly, David Ohlssen, George Nicholson:
A framework for longitudinal latent factor modelling of treatment response in clinical trials with applications to Psoriatic Arthritis and Rheumatoid Arthritis. J. Biomed. Informatics 154: 104641 (2024)- [j94]Sunitha Basodi, Rajikha Raja, Harshvardhan Gazula, Javier Tomas Romero, Sandeep R. Panta, Thomas Maullin-Sapey, Thomas E. Nichols, Vince D. Calhoun:
Decentralized Mixed Effects Modeling in COINSTAC. Neuroinformatics 22(2): 163-175 (2024) - [j93]Lilia Costa, Osvaldo Anacleto-Junior, Diego C. Nascimento, James Q. Smith, Catriona M. Queen, Francisco Louzada, Tom E. Nichols:
Evaluating brain group structure methods using hierarchical dynamic models. Pattern Recognit. 155: 110687 (2024) - 2023
- [j92]Yizhou Ma, Mark D. Kvarta, Bhim M. Adhikari, Joshua Chiappelli, Xiaoming Du, Andrew van der Vaart, Eric L. Goldwaser, Heather Bruce, Kathryn S. Hatch, Si Gao, Ann Summerfelt, Neda Jahanshad, Paul M. Thompson, Thomas E. Nichols, L. Elliot Hong, Peter V. Kochunov:
Association between brain similarity to severe mental illnesses and comorbid cerebral, physical, and cognitive impairments. NeuroImage 265: 119786 (2023) - [j91]Barnaly Rashid, Matthew F. Glasser, Thomas E. Nichols, David C. Van Essen, Meher R. Juttukonda, Nadine A. Schwab, Douglas N. Greve, Essa Yacoub, Allison E. Lovely, Melissa Terpstra, Michael P. Harms, Susan Y. Bookheimer, Beau M. Ances, David H. Salat, Steven E. Arnold:
Cardiovascular and metabolic health is associated with functional brain connectivity in middle-aged and older adults: Results from the Human Connectome Project-Aging study. NeuroImage 276: 120192 (2023) - [c16]Fuping Wu, Le Zhang, Yang Sun, Yuanhan Mo, Thomas E. Nichols, Bartlomiej W. Papiez:
Multi-task Cooperative Learning via Searching for Flat Minima. ISIC/Care-AI/MedAGI/DeCaF@MICCAI 2023: 171-181 - [d1]Aaron Oliver-Taylor, Adam Li, Adam G. Thomas, Adeen Flinker, Adina S. Wagner, Agah Karakuzu, Aki Nikolaidis, Alberto Lazari, Alejandro de la Vega, Alessio Giacomel, Alexander Rockhill, Alexander Jones, Alexander Li Cohen, Alexander von Lautz, Alexandre Gramfort, Alexandre Hutton, Alexandre Routier, Alexandru Foias, Ali Khan, Alizee Wickenheiser, Ana Fouto, Anders Eklund, Andrea Pigorini, Andrew Hoopes, Andrew Jahn, Andrew Janke, Anibal Sólon, Anthony Galassi, Ariel Rokem, Arjen Stolk, Arnaud Delorme, Arnaud Marcoux, Arshitha Basavaraj, Ashley G. Gillman, Athanasia M. Mowinckel, Aysegul Gunduz, Azeez Adebimpe, B. Nolan Nichols, Balint Kincses, Benjamin Beasley, Benjamin K. Dichter, Benjamin Gagl, Bertrand Thirion, Bradley Voytek, Brett L. Foster, Brian A. Wandell, Brian N. Lundstrom, Camille Maumet, Carlo Miniussi, Cecile Madjar, Chloé Pasturel, Chris Benjamin, Chris Gahnström, Chris Holdgraf, Chris Gorgolewski, Chris Rorden, Christian Büchel, Christian Horea, Christine Rogers, Christophe Phillips, Christopher J. Honey, Christopher J. Markiewicz, Christopher Lee-Messer, Clara Moreau, Clint Hansen, Cyril R. Pernet, Cyrus Eierud, D. Sturgeon, Dan Levitas, Dan Lurie, Daniel A. Handwerker, David C. Alsop, David A. Boas, David M. Groppe, David B. Keator, David McAlpine, David Thomas, Dejan Draschkow, Dianne K. Patterson, Dimitri Papadopoulos Orfanos, Dmitry Petrov, Dora Hermes, Dorien Huijser, Douglas N. Greve, Duncan Macleod, Dung Truong, Dylan Nielson, Eduard Ort, Eleonora Marcantoni, Elizabeth Bock, Elizabeth DuPre, Elke Warmerdam, Erdal Karaca, Eric A. Earl, Eric Achten, Eric Bridgeford, Erin W. Dickie, Ethan Blackwood, Eugene P. Duff, Ezequiel Mikulan, Felipe Orihuela-Espina, Fidel Alfaro-Almagro, Filip Szczepankiewicz, Filippo Maria Castelli, Franco Pestilli, Franklin W. Feingold, François Tadel, Gaia Rizzo, Gang Chen, Gaël Varoquaux, Ghislain Vaillant, Giacomo Bertazzoli, Giacomo Guidali, Giacomo Mazzamuto, Gilles de Hollander, Gio Piantoni, Gitte M. Knudsen, Giulio Castegnaro, Giuseppe Gallitto, Graham Searle, Granville J. Matheson, Gregory Kiar, Gregory Noack, Greydon Gilmore, Guillaume Flandin, Gunnar Schaefer, Gustav Nilsonne, Hamish Innes-Brown, Hanne D. Hansen, Hanzhang Lu, Hao-Ting Wang, Helena Cockx, Henk Mutsaerts, Hernando Ombao, Hugo Boniface, Ayse Ilkay Isik, Ilona Lipp, International Neuroinformatics Coordinating Facility, Iris I. A. Groen, Isla Staden, Jaap von der Aar, Jakub Kaczmarzyk, James Gholam, James Kent, Jan-Mathijs Schoffelen, Jan Petr, Jean-Baptiste Poline, Jean-Christophe Houde, Jean-Dominique Gallezot, Jean-Philippe Lachaux, Jeanette Mumford, Jefferson Casimir, Jeffrey G. Ojemann, Jeffrey S. Grethe, JegouA, Jelle R. Dalenberg, Jeremy T. Moreau, Jessica A. Turner, Jochem W. Rieger, John A. Detre, John Pellman, John T. Wodder, Joke Durnez, Jon Haitz Legarreta Gorrono, Jonathan C. Lau, Jonathan Winawer, Joost P. A. Kuijer, Jose Manuel Saborit, Joseph Wexler, Joseph G. Woods, J. Guiomar Niso, Julia Sprenger, Julien Cohen-Adad, Julius Welzel, Kai J. Miller, Kangjoo Lee, Katja Heuer, Kay Robbins, Kevin Larcher, Kimberly L. Ray, Kirstie J. Whitaker, Klara Gregorova, Klaus Gramann, Kris Thielemans, Kristofer E. Bouchard, Kurt Schilling, Laetitia Fesselier, Laura & John Arnold Foundation, Leandro Beltrachini, Lee Kamentsky, Lennart Walger, Lennart Wittkuhn, Liberty S. Hamilton, Luca Pollonini, Luis Hernandez-Garcia, Luke J. Edwards, Lyuba Zehl, Mainak Jas, Manjari Narayan, Manuel R. Mercier, Maqsood Yaqub, Marc Lalancette, Marco Castellaro, Maria de la Iglesia, Marie-Hélène Bourget, Mark Mikkelsen, Markus Morawski, Marta Bortoletto, Martin Craig, Martin Nørgaard, Martin Szinte, Martin Wilson, Martina Bulgari, Mateusz Pawlik, Mathias Goncalves, Mathieu Boudreau, Matt Sanderson, Matteo Tonietto, Matthias Günther, Matthias Van Osch, Maureen J. Shader, Maurice Pasternak, Max A. van den Boom, Melanie Ganz-Benjaminsen, Michael Chappell, Michael Hanke, Michael P. Harms, Michael P. Milham, Michael P. Notter, Michael Schirner, Mikaël Naveau, Nader Pouratian, Natalia Petridou, National Institute of Mental Health, Nell Hardcastle, Nicholas Traut, Nick F. Ramsey, Nicole C. Swann, Nima Bigdely Shamlo, Olivier David, Orrin Devinsky, Oscar Esteban, Pamela LaMontagne, Parul Sethi, Patricia Clement, Patrick Park, Paule-Joanne Toussaint, Peer Herholz, Petra Ritter, Pierre Rioux, Pieter Vandemaele, Pradeep Reddy Raamana, R. Cameron Craddock, Rémi Gau, Richard Höchenberger, Richard N. Henson, Robert B. Innis, Robert E. Smith, Robert Knight, Robert Luke, Robert Oostenveld, Roberto Toro, Rohan Goyal, Ross W. Blair, Russell A. Poldrack, Rémi Adon, Samir Das, Samuel Garcia, Samuel A. Nastase, Sara Elgayar, Sasha D'Ambrosio, Satrajit S. Ghosh, Scott Makeig, Sein Jeung, Shashank Bansal, Sjoerd B. Vos, Soichi Hayashi, Stefan Appelhoff, Stephan Bickel, Steven L. Meisler, Suyash Bhogawar, Sylvain Baillet, Sylvain Takerkart, Sébastien Tourbier, Sören Grothkopp, Tal Pal Attia, Tal Yarkoni, Tamas Spisak, Tamás Józsa, Taylor Salo, Teon L. Brooks, Thomas E. Nichols, Thomas Funck, Thomas Kirk, Thomas W. Okell, Tibor Auer, Timo Dickscheid, Timotheus Berg, Tobey Betthauser, Tobias Bengfort, Tom Hampshire, Tor Wager, Travis Riddle, Tristan Glatard, Tyler Collins, Ulrike Bingel, Vanessa V. Sochat, Vasudev Raguram, Vince D. Calhoun, Vittorio Iacovella, Vladimir Litvak, Wietske van der Zwaag, William Clarke, William Triplett, Wouter V. Potters, Xiangrui Li, Yaroslav O. Halchenko, Yoni Ashar, Yuan Wang, Zachary Michael, ezemikulan, josator2, monkeyman192, Étienne Bergeron:
bids-specification. Zenodo, 2023
- [i2]Fuping Wu, Le Zhang, Yang Sun, Yuanhan Mo, Thomas E. Nichols, Bartlomiej W. Papiez:
Multi-Task Cooperative Learning via Searching for Flat Minima. CoRR abs/2309.12090 (2023) - 2022
- [j90]Daniel J. Delbarre, Luis A. Santos, Habib Ganjgahi, Neil R. Horner, Aaron McCoy, Henrik Westerberg, Dieter A. Häring, Thomas E. Nichols, Ann-Marie Mallon:
Application of a convolutional neural network to the quality control of MRI defacing. Comput. Biol. Medicine 151(Part): 106211 (2022) - [j89]Bernd Taschler, Stephen M. Smith, Thomas E. Nichols:
Causal inference on neuroimaging data with Mendelian randomisation. NeuroImage 258: 119385 (2022) - [j88]Bhim M. Adhikari, L. Elliot Hong, Zhiwei Zhao, Danny J. J. Wang, Paul M. Thompson, Neda Jahanshad, Alyssa H. Zhu, Stefan Holiga, Jessica A. Turner, Theo G. M. van Erp, Vince D. Calhoun, Kathryn S. Hatch, Heather Bruce, Stephanie M. Hare, Joshua Chiappelli, Eric L. Goldwaser, Mark D. Kvarta, Yizhou Ma, Xiaoming Du, Thomas E. Nichols, Alan R. Shuldiner, Braxton D. Mitchell, Juergen Dukart, Peter V. Kochunov:
Cerebral blood flow and cardiovascular risk effects on resting brain regional homogeneity. NeuroImage 262: 119555 (2022) - [j87]Thomas Maullin-Sapey, Thomas E. Nichols:
BLMM: Parallelised computing for big linear mixed models. NeuroImage 264: 119729 (2022) - 2021
- [j86]Fidel Alfaro-Almagro, Paul McCarthy, Soroosh Afyouni, Jesper L. R. Andersson, Matteo Bastiani, Karla L. Miller, Thomas E. Nichols, Stephen M. Smith:
Confound modelling in UK Biobank brain imaging. NeuroImage 224: 117002 (2021) - [j85]Alexander Bowring, Fabian J. E. Telschow, Armin Schwartzman, Thomas E. Nichols:
Confidence Sets for Cohen's d effect size images. NeuroImage 226: 117477 (2021) - [j84]Petya Kindalova, Ioannis Kosmidis, Thomas E. Nichols:
Voxel-wise and spatial modelling of binary lesion masks: Comparison of methods with a realistic simulation framework. NeuroImage 236: 118090 (2021) - [j83]Anthony Steven Dick, Daniel A. Lopez, Ashley L. Watts, Steven Heeringa, Chase Reuter, Hauke Bartsch, Chun Chieh Fan, David N. Kennedy, Clare E. Palmer, Andrew Marshall, Frank Haist, Samuel Hawes, Thomas E. Nichols, Deanna M. Barch, Terry L. Jernigan, Hugh Garavan, Steven Grant, Vani Pariyadath, Elizabeth Hoffman, Michael C. Neale, Elizabeth A. Stuart, Martin P. Paulus, Kenneth J. Sher, Wesley K. Thompson:
Meaningful associations in the adolescent brain cognitive development study. NeuroImage 239: 118262 (2021) - [j82]Si Gao, Brian Donohue, Kathryn S. Hatch, Shuo Chen, Tianzhou Ma, Yizhou Ma, Mark D. Kvarta, Heather Bruce, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, John Blangero, L. Elliot Hong, Sarah E. Medland, Habib Ganjgahi, Thomas E. Nichols, Peter V. Kochunov:
Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project. NeuroImage 245: 118700 (2021) - [j81]Thomas Maullin-Sapey, Thomas E. Nichols:
Fisher Scoring for crossed factor linear mixed models. Stat. Comput. 31(5): 53 (2021) - 2020
- [j80]Samuel Davenport, Thomas E. Nichols:
Selective peak inference: Unbiased estimation of raw and standardized effect size at local maxima. NeuroImage 209: 116375 (2020) - [j79]Bianca A. V. Alberton, Thomas E. Nichols, Humberto R. Gamba, Anderson M. Winkler:
Multiple testing correction over contrasts for brain imaging. NeuroImage 216: 116760 (2020) - [j78]Marco Palma, Shahin Tavakoli, Julia Brettschneider, Thomas E. Nichols, Alzheimer's Disease Neuroimaging Initiative:
Quantifying uncertainty in brain-predicted age using scalar-on-image quantile regression. NeuroImage 219: 116938 (2020) - [j77]Dragana M. Pavlovic, Bryan Guillaume, Emma K. Towlson, Nicole M. Y. Kuek, Soroosh Afyouni, Petra E. Vértes, B. T. Thomas Yeo, Edward T. Bullmore, Thomas E. Nichols:
Multi-subject Stochastic Blockmodels for adaptive analysis of individual differences in human brain network cluster structure. NeuroImage 220: 116611 (2020) - [j76]Anderson M. Winkler, Olivier Renaud, Stephen M. Smith, Thomas E. Nichols:
Permutation inference for canonical correlation analysis. NeuroImage 220: 117065 (2020)
2010 – 2019
- 2019
- [j75]Peter V. Kochunov, Binish Patel, Habib Ganjgahi, Brian Donohue, Meghann Ryan, L. Elliot Hong, Xu Chen, Bhim M. Adhikari, Neda Jahanshad, Paul M. Thompson, Dennis van 't Ent, Anouk den Braber, Eco J. C. de Geus, Rachel M. Brouwer, Dorret I. Boomsma, Hilleke E. Hulshoff Pol, Greig I. de Zubicaray, Katie L. McMahon, Nicholas G. Martin, Margaret J. Wright, Thomas E. Nichols:
Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data. Frontiers Neuroinformatics 13: 16 (2019) - [j74]Danilo Bzdok, Thomas E. Nichols, Stephen M. Smith:
Towards algorithmic analytics for large-scale datasets. Nat. Mach. Intell. 1(7): 296-306 (2019) - [j73]Tamás Spisák, Zsófia Spisák, Matthias Zunhammer, Ulrike Bingel, Stephen M. Smith, Thomas E. Nichols, Zsigmond Tamás Kincses:
Probabilistic TFCE: A generalized combination of cluster size and voxel intensity to increase statistical power. NeuroImage 185: 12-26 (2019) - [j72]Vaanathi Sundaresan, Ludovica Griffanti, Petya Kindalova, Fidel Alfaro-Almagro, Giovanna Zamboni, Peter M. Rothwell, Thomas E. Nichols, Mark Jenkinson:
Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference. NeuroImage 185: 434-445 (2019) - [j71]Soroosh Afyouni, Stephen M. Smith, Thomas E. Nichols:
Effective degrees of freedom of the Pearson's correlation coefficient under autocorrelation. NeuroImage 199: 609-625 (2019) - [j70]Stephen M. Smith, Diego Vidaurre, Fidel Alfaro-Almagro, Thomas E. Nichols, Karla L. Miller:
Estimation of brain age delta from brain imaging. NeuroImage 200: 528-539 (2019) - [j69]Alexander Bowring, Fabian J. E. Telschow, Armin Schwartzman, Thomas E. Nichols:
Spatial confidence sets for raw effect size images. NeuroImage 203 (2019) - 2018
- [j68]Soroosh Afyouni, Thomas E. Nichols:
Insight and inference for DVARS. NeuroImage 172: 291-312 (2018) - [j67]Simon Schwab, Ruth Harbord, Valerio Zerbi, Lloyd T. Elliott, Soroosh Afyouni, Jim Q. Smith, Mark W. Woolrich, Stephen M. Smith, Thomas E. Nichols:
Directed functional connectivity using dynamic graphical models. NeuroImage 175: 340-353 (2018) - [j66]Leah H. Somerville, Susan Y. Bookheimer, Randy L. Buckner, Gregory C. Burgess, Sandra W. Curtiss, Mirella Dapretto, Jennifer Stine Elam, Michael S. Gaffrey, Michael P. Harms, Cynthia Hodge, Sridhar Kandala, Erik K. Kastman, Thomas E. Nichols, Bradley L. Schlaggar, Stephen M. Smith, Kathleen M. Thomas, Essa Yacoub, David C. Van Essen, Deanna M. Barch:
The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds. NeuroImage 183: 456-468 (2018) - [c15]Bhim M. Adhikari, Neda Jahanshad, Dinesh Shukla, David C. Glahn, John Blangero, Richard C. Reynolds, Robert W. Cox, Els Fieremans, Jelle Veraart, Dmitry S. Novikov, Thomas E. Nichols, L. Elliot Hong, Paul M. Thompson, Peter V. Kochunov:
Heritability estimates on resting state fMRI data using the ENIGMA analysis pipeline. PSB 2018: 307-318 - 2017
- [j65]Chenyang Tao, Thomas E. Nichols, Xue Hua, Christopher R. K. Ching, Edmund T. Rolls, Paul M. Thompson, Jianfeng Feng:
Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications. NeuroImage 144: 35-57 (2017) - [j64]Susan D. Shenkin, Cyril R. Pernet, Thomas E. Nichols, Jean-Baptiste Poline, Paul M. Matthews, Aad van der Lugt, Clare E. Mackay, Linda J. Lanyon, Bernard Mazoyer, James P. Boardman, Paul M. Thompson, Nick C. Fox, Daniel S. Marcus, Aziz Sheikh, Simon R. Cox, Devasuda Anblagan, Dominic Job, David Alexander Dickie, David Rodriguez, Joanna M. Wardlaw:
Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group. NeuroImage 153: 399-409 (2017) - [j63]Javier Gonzalez-Castillo, Gang Chen, Thomas E. Nichols, Peter A. Bandettini:
Variance decomposition for single-subject task-based fMRI activity estimates across many sessions. NeuroImage 154: 206-218 (2017) - [j62]Felipe Gutierrez-Barragan, Vamsi K. Ithapu, Chris Hinrichs, Camille Maumet, Sterling C. Johnson, Thomas E. Nichols, Vikas Singh:
Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM. NeuroImage 159: 79-98 (2017) - [i1]Felipe Gutierrez-Barragan, Vamsi K. Ithapu, Chris Hinrichs, Camille Maumet, Sterling C. Johnson, Thomas E. Nichols, Vikas Singh:
Accelerating Permutation Testing in Voxel-wise Analysis through Subspace Tracking: A new plugin for SnPM. CoRR abs/1703.01506 (2017) - 2016
- [j61]Ruth Pauli, Alexander Bowring, Richard C. Reynolds, Gang Chen, Thomas E. Nichols, Camille Maumet:
Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM. Frontiers Neuroinformatics 10: 24 (2016) - [j60]Simon B. Eickhoff, Thomas E. Nichols, John D. Van Horn, Jessica A. Turner:
Sharing the wealth: Neuroimaging data repositories. NeuroImage 124: 1065-1068 (2016) - [j59]Krzysztof J. Gorgolewski, Gaël Varoquaux, Gabriel Rivera, Yannick Schwartz, Vanessa V. Sochat, Satrajit S. Ghosh, Camille Maumet, Thomas E. Nichols, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies, Russell A. Poldrack:
NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. NeuroImage 124: 1242-1244 (2016) - [j58]Peter V. Kochunov, Paul M. Thompson, Anderson M. Winkler, Mary Morrissey, Mao Fu, Thomas R. Coyle, Xiaoming Du, Florian Muellerklein, Anya Savransky, Christopher Gaudiot, Hemalatha Sampath, George Eskandar, Neda Jahanshad, Binish Patel, Laura Rowland, Thomas E. Nichols, Jeffrey R. O'Connell, Alan R. Shuldiner, Braxton D. Mitchell, L. Elliot Hong:
The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects. NeuroImage 125: 189-197 (2016) - [j57]Adam G. Thomas, Andrea Dennis, Nancy B. Rawlings, Charlotte J. Stagg, Lucy Matthews, Martyn Morris, Shannon H. Kolind, Sean Foxley, Mark Jenkinson, Thomas E. Nichols, Helen Dawes, Peter A. Bandettini, Heidi Johansen-Berg:
Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise. NeuroImage 131: 162-170 (2016) - [j56]Simon B. Eickhoff, Thomas E. Nichols, Angela R. Laird, Felix Hoffstaedter, Katrin Amunts, Peter T. Fox, Danilo Bzdok, Claudia R. Eickhoff:
Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation. NeuroImage 137: 70-85 (2016) - [j55]Anderson M. Winkler, Gerard R. Ridgway, Gwenaëlle Douaud, Thomas E. Nichols, Stephen M. Smith:
Faster permutation inference in brain imaging. NeuroImage 141: 502-516 (2016) - 2015
- [j54]Krzysztof J. Gorgolewski, Gaël Varoquaux, Gabriel Rivera, Yannick Schwartz, Satrajit S. Ghosh, Camille Maumet, Vanessa V. Sochat, Thomas E. Nichols, Russell A. Poldrack, Jean-Baptiste Poline, Tal Yarkoni, Daniel S. Margulies:
NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers Neuroinformatics 9: 8 (2015) - [j53]Chris J. Oates, Lilia Carneiro da Costa, Tom E. Nichols:
Toward a Multisubject Analysis of Neural Connectivity. Neural Comput. 27(1): 151-170 (2015) - [j52]Tian Ge, Thomas E. Nichols, Debashis Ghosh, Elizabeth C. Mormino, Jordan W. Smoller, Mert R. Sabuncu:
A kernel machine method for detecting effects of interaction between multidimensional variable sets: An imaging genetics application. NeuroImage 109: 505-514 (2015) - [j51]Peter V. Kochunov, Neda Jahanshad, Daniel S. Marcus, Anderson M. Winkler, Emma Sprooten, Thomas E. Nichols, Susan N. Wright, L. Elliot Hong, Binish Patel, Timothy Behrens, Saâd Jbabdi, Jesper L. R. Andersson, Christophe Lenglet, Essa Yacoub, Steen Moeller, Eddie Auerbach, Kâmil Ugurbil, Stamatios N. Sotiropoulos, Rachel M. Brouwer, Bennett A. Landman, Hervé Lemaître, Anouk den Braber, Marcel P. Zwiers, Stuart J. Ritchie, Kimm van Hulzen, Laura Almasy, Joanne E. Curran, Greig I. de Zubicaray, Ravi Duggirala, Peter T. Fox:
Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data. NeuroImage 111: 300-311 (2015) - [j50]Edmund T. Rolls, Michele B. Kellerhals, Thomas E. Nichols:
Age differences in the brain mechanisms of good taste. NeuroImage 113: 298-309 (2015) - [j49]Habib Ganjgahi, Anderson M. Winkler, David C. Glahn, John Blangero, Peter V. Kochunov, Thomas E. Nichols:
Fast and powerful heritability inference for family-based neuroimaging studies. NeuroImage 115: 256-268 (2015) - [j48]Meiyan Huang, Thomas E. Nichols, Chao Huang, Yang Yu, Zhaohua Lu, Rebecca C. Knickmeyer, Qianjin Feng, Hongtu Zhu:
FVGWAS: Fast voxelwise genome wide association analysis of large-scale imaging genetic data. NeuroImage 118: 613-627 (2015) - [j47]Huanjie Li, Lisa D. H. Nickerson, Xuna Zhao, Thomas E. Nichols, Jia-Hong Gao:
A voxelation-corrected non-stationary 3D cluster-size test based on random field theory. NeuroImage 118: 676-682 (2015) - [j46]Anderson M. Winkler, Matthew A. Webster, Diego Vidaurre, Thomas E. Nichols, Stephen M. Smith:
Multi-level block permutation. NeuroImage 123: 253-268 (2015) - [j45]Tor D. Wager, Jian Kang, Timothy D. Johnson, Thomas E. Nichols, Ajay B. Satpute, Lisa Feldman Barrett:
A Bayesian Model of Category-Specific Emotional Brain Responses. PLoS Comput. Biol. 11(4) (2015) - [c14]Anders Eklund, Thomas E. Nichols, Mats T. Andersson, Hans Knutsson:
Empirically investigating the statistical validity of SPM, FSL and AFNI for single subject fMRI analysis. ISBI 2015: 1376-1380 - [c13]Boris A. Gutman, Neda Jahanshad, Christopher R. K. Ching, Yalin Wang, Peter V. Kochunov, Thomas E. Nichols, Paul M. Thompson:
Medial demons registration localizes the degree of genetic influence over subcortical shape variability: An N= 1480 meta-analysis. ISBI 2015: 1402-1406 - 2014
- [j44]Joke Durnez, Beatrijs Moerkerke, Thomas E. Nichols:
Post-hoc power estimation for topological inference in fMRI. NeuroImage 84: 45-64 (2014) - [j43]Neda Jahanshad, Peter V. Kochunov, Emma Sprooten, René C. W. Mandl, Thomas E. Nichols, Laura Almasy, John Blangero, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Nicholas G. Martin, Katie L. McMahon, Sarah E. Medland, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Hilleke E. Hulshoff Pol, Mark E. Bastin, Andrew M. McIntosh, Ian J. Deary, Paul M. Thompson:
Corrigendum to "Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group" [NeuroImage 81 (2013) 455-469]. NeuroImage 90: 470-471 (2014) - [j42]Anderson M. Winkler, Gerard R. Ridgway, Matthew A. Webster, Stephen M. Smith, Thomas E. Nichols:
Permutation inference for the general linear model. NeuroImage 92: 381-397 (2014) - [j41]Bryan Guillaume, Xue Hua, Paul M. Thompson, Lourens J. Waldorp, Thomas E. Nichols:
Fast and accurate modelling of longitudinal and repeated measures neuroimaging data. NeuroImage 94: 287-302 (2014) - [j40]Peter V. Kochunov, Neda Jahanshad, Emma Sprooten, Thomas E. Nichols, René C. W. Mandl, Laura Almasy, Tom Booth, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Rali Dimitrova, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Hervé Lemaître, Lorna M. Lopez, Nicholas G. Martin, Katie L. McMahon, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Susan N. Wright:
Multi-site study of additive genetic effects on fractional anisotropy of cerebral white matter: Comparing meta and megaanalytical approaches for data pooling. NeuroImage 95: 136-150 (2014) - [j39]Arash Nazeri, Habib Ganjgahi, Tina Roostaei, Thomas E. Nichols, Mojtaba Zarei:
Imaging proteomics for diagnosis, monitoring and prediction of Alzheimer's disease. NeuroImage 102: 657-665 (2014) - [c12]Neda Jahanshad, Peter V. Kochunov, Thomas E. Nichols, Emma Sprooten, René C. W. Mandl, Laura Almasy, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Rali Dimitrova, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Hervé Lemaître, Lorna M. Lopez, Nicholas G. Martin, Katie L. McMahon, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Susan N. Wright, Mark E. Bastin, Andrew M. McIntosh, Dorret I. Boomsma, René S. Kahn, Anouk den Braber, Ian J. Deary, Hilleke E. Hulshoff Pol, Douglas Williamson, John Blangero, Dennis van 't Ent, David C. Glahn, Paul M. Thompson:
Combining meta- and mega- analytic approaches for multi-site diffusion imaging based genetic studies: From the ENIGMA-DTI working group. ISBI 2014: 1234-1238 - [c11]Bernd Taschler, Tian Ge, Kerstin Bendfeldt, Nicole Müller-Lenke, Timothy D. Johnson, Thomas E. Nichols:
Spatial Modeling of Multiple Sclerosis for Disease Subtype Prediction. MICCAI (2) 2014: 797-804 - [c10]Mary Ellen Koran, Bo Li, Neda Jahanshad, Tricia A. Thornton-Wells, David C. Glahn, Paul M. Thompson, John Blangero, Thomas E. Nichols, Peter V. Kochunov, Bennett A. Landman:
On study design in neuroimaging heritability analyses. Image Processing 2014: 90342P - 2013
- [j38]Paul M. Thompson, Tian Ge, David C. Glahn, Neda Jahanshad, Thomas E. Nichols:
Genetics of the connectome. NeuroImage 80: 475-488 (2013) - [j37]Neda Jahanshad, Peter V. Kochunov, Emma Sprooten, René C. W. Mandl, Thomas E. Nichols, Laura Almasy, John Blangero, Rachel M. Brouwer, Joanne E. Curran, Greig I. de Zubicaray, Ravindranath Duggirala, Peter T. Fox, L. Elliot Hong, Bennett A. Landman, Nicholas G. Martin, Katie McMahon, Sarah E. Medland, Braxton D. Mitchell, Rene L. Olvera, Charles P. Peterson, John M. Starr, Jessika E. Sussmann, Arthur W. Toga, Joanna M. Wardlaw, Margaret J. Wright, Hilleke E. Hulshoff Pol, Mark E. Bastin, Andrew M. McIntosh, Ian J. Deary, Paul M. Thompson:
Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group. NeuroImage 81: 455-469 (2013) - [j36]Peter V. Kochunov, Jac Charlesworth, Anderson M. Winkler, L. Elliot Hong, Thomas E. Nichols, Joanne E. Curran, Emma Sprooten, Neda Jahanshad, Paul M. Thompson, M. P. Johnson, Jack W. Kent Jr., Bennett A. Landman, Braxton D. Mitchell, S. A. Cole, Thomas D. Dyer, Eric K. Moses, H. H. H. Goring, Laura Almasy, Ravindranath Duggirala, Rene L. Olvera, David C. Glahn, John Blangero:
Transcriptomics of cortical gray matter thickness decline during normal aging. NeuroImage 82: 273-283 (2013) - [c9]Neda Jahanshad, Peter V. Kochunov, David C. Glahn, John Blangero, Thomas E. Nichols, Katie L. McMahon, Greig I. de Zubicaray, Nicholas G. Martin, Margaret J. Wright, Clifford R. Jack Jr., Matt A. Bernstein, Michael W. Weiner, Arthur W. Toga, Paul M. Thompson:
Power Estimates for Voxel-Based Genetic Association Studies Using Diffusion Imaging. CDMRI/MMBC@MICCAI 2013: 229-238 - 2012
- [j35]Stephen M. Smith, Peter A. Bandettini, Karla L. Miller, T. E. J. Behrens, Karl J. Friston, Olivier David, Thomas T. Liu, Mark William Woolrich, Thomas E. Nichols:
The danger of systematic bias in group-level FMRI-lag-based causality estimation. NeuroImage 59(2): 1228-1229 (2012) - [j34]Kerstin Bendfeldt, Stefan Klöppel, Thomas E. Nichols, Renata Smieskova, Pascal Kuster, Stefan Traud, Nicole Mueller-Lenke, Yvonne Naegelin, Ludwig Kappos, Ernst-Wilhelm Radue, Stefan J. Borgwardt:
Multivariate pattern classification of gray matter pathology in multiple sclerosis. NeuroImage 60(1): 400-408 (2012) - [j33]Anderson M. Winkler, Mert R. Sabuncu, B. T. Thomas Yeo, Bruce Fischl, Douglas N. Greve, Peter V. Kochunov, Thomas E. Nichols, John Blangero, David C. Glahn:
Measuring and comparing brain cortical surface area and other areal quantities. NeuroImage 61(4): 1428-1443 (2012) - [j32]Thomas E. Nichols:
Multiple testing corrections, nonparametric methods, and random field theory. NeuroImage 62(2): 811-815 (2012) - [j31]Tian Ge, Jianfeng Feng, Derrek P. Hibar, Paul M. Thompson, Thomas E. Nichols:
Increasing power for voxel-wise genome-wide association studies: The random field theory, least square kernel machines and fast permutation procedures. NeuroImage 63(2): 858-873 (2012) - 2011
- [j30]Stephen M. Smith, Karla L. Miller, Gholamreza Salimi Khorshidi, Matthew A. Webster, Christian F. Beckmann, Thomas E. Nichols, Joseph D. Ramsey, Mark William Woolrich:
Network modelling methods for FMRI. NeuroImage 54(2): 875-891 (2011) - [j29]Matt Silver, Giovanni Montana, Thomas E. Nichols:
False positives in neuroimaging genetics using voxel-based morphometry data. NeuroImage 54(2): 992-1000 (2011) - [j28]Gholamreza Salimi Khorshidi, Stephen M. Smith, Thomas E. Nichols:
Adjusting the effect of nonstationarity in cluster-based and TFCE inference. NeuroImage 54(3): 2006-2019 (2011) - [j27]Gholamreza Salimi Khorshidi, Thomas E. Nichols, Stephen M. Smith, Mark William Woolrich:
Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations. IEEE Trans. Medical Imaging 30(7): 1401-1416 (2011) - 2010
- [j26]Becky Inkster, Thomas E. Nichols, Philipp G. Saemann, Dorothee P. Auer, Florian Holsboer, Pierandrea Muglia, Paul M. Matthews:
Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression. NeuroImage 53(3): 908-917 (2010) - [j25]Maria Vounou, Thomas E. Nichols, Giovanni Montana:
Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach. NeuroImage 53(3): 1147-1159 (2010)
2000 – 2009
- 2009
- [j24]Hui Zhang, Thomas E. Nichols, Timothy D. Johnson:
Cluster mass inference via random field theory. NeuroImage 44(1): 51-61 (2009) - [j23]Stephen M. Smith, Thomas E. Nichols:
Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference. NeuroImage 44(1): 83-98 (2009) - [j22]Dimitrios Pantazis, Gregory V. Simpson, Darren L. Weber, Corby L. Dale, Thomas E. Nichols, Richard M. Leahy:
A novel ANCOVA design for analysis of MEG data with application to a visual attention study. NeuroImage 44(1): 164-174 (2009) - [j21]Nicola Filippini, Anil Rao, Sally Wetten, Rachel A. Gibson, Michael Borrie, Danilo Guzman, Andrew Kertesz, Inge Loy-English, Julie Williams, Thomas E. Nichols, Brandon J. Whitcher, Paul M. Matthews:
Anatomically-distinct genetic associations of APOE ɛ4 allele load with regional cortical atrophy in Alzheimer's disease. NeuroImage 44(3): 724-728 (2009) - [j20]Kerstin Bendfeldt, Pascal Kuster, Stefan Traud, Hanspeter Egger, Sebastian Winklhofer, Nicole Mueller-Lenke, Yvonne Naegelin, Achim Gass, Ludwig Kappos, Paul M. Matthews, Thomas E. Nichols, Ernst-Wilhelm Radue, Stefan J. Borgwardt:
Association of regional gray matter volume loss and progression of white matter lesions in multiple sclerosis - A longitudinal voxel-based morphometry study. NeuroImage 45(1): 60-67 (2009) - [j19]Paul M. Thompson, Michael I. Miller, Russell A. Poldrack, Thomas E. Nichols, Jonathan E. Taylor, Keith J. Worsley, J. Tilak Ratnanather:
Special Issue on Mathematics in Brain Imaging. NeuroImage 45(1): S1-S2 (2009) - [j18]Tor D. Wager, Martin A. Lindquist, Thomas E. Nichols, Hedy Kober, Jared X. Van Snellenberg:
Evaluating the consistency and specificity of neuroimaging data using meta-analysis. NeuroImage 45(1): S210-S221 (2009) - [j17]Gholamreza Salimi Khorshidi, Stephen M. Smith, John Keltner, Tor D. Wager, Thomas E. Nichols:
Meta-analysis of neuroimaging data: A comparison of image-based and coordinate-based pooling of studies. NeuroImage 45(3): 810-823 (2009) - [j16]Jeanette A. Mumford, Thomas E. Nichols:
Simple group fMRI modeling and inference. NeuroImage 47(4): 1469-1475 (2009) - [c8]Gholamreza Salimi Khorshidi, Stephen M. Smith, Thomas E. Nichols:
Adjusting the Neuroimaging Statistical Inferences for Nonstationarity. MICCAI (1) 2009: 992-999 - 2008
- [j15]Jeanette A. Mumford, Thomas E. Nichols:
Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation. NeuroImage 39(1): 261-268 (2008) - [j14]Russell A. Poldrack, Paul C. Fletcher, Richard N. Henson, Keith J. Worsley, Matthew Brett, Thomas E. Nichols:
Guidelines for reporting an fMRI study. NeuroImage 40(2): 409-414 (2008) - 2007
- [j13]Chris Rorden, Leonardo Bonilha, Thomas E. Nichols:
Rank-order versus mean based statistics for neuroimaging. NeuroImage 35(4): 1531-1537 (2007) - [c7]Dimitrios Pantazis, Gregory V. Simpson, Darren L. Weber, Corby L. Dale, Thomas E. Nichols, Richard M. Leahy:
Exploring Human Visual Attention in an Meg Study of a Spatial Cueing Paradigm Using a Novel Ancova Design. ISBI 2007: 1096-1099 - 2006
- [j12]Torben Ellegaard Lund, Kristoffer Hougaard Madsen, Karam Sidaros, Wen-Lin Luo, Thomas E. Nichols:
Non-white noise in fMRI: Does modelling have an impact? NeuroImage 29(1): 54-66 (2006) - [j11]Stephen M. Smith, Mark Jenkinson, Heidi Johansen-Berg, Daniel Rueckert, Thomas E. Nichols, Clare E. Mackay, Kate E. Watkins, Olga Ciccarelli, M. Zaheer Cader, Paul M. Matthews, Timothy Edward John Behrens:
Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data. NeuroImage 31(4): 1487-1505 (2006) - [j10]Jeanette A. Mumford, Luis Hernandez-Garcia, Gregory R. Lee, Thomas E. Nichols:
Estimation efficiency and statistical power in arterial spin labeling fMRI. NeuroImage 33(1): 103-114 (2006) - 2005
- [j9]Dimitrios Pantazis, Thomas E. Nichols, Sylvain Baillet, Richard M. Leahy:
A comparison of random field theory and permutation methods for the statistical analysis of MEG data. NeuroImage 25(2): 383-394 (2005) - [j8]Thomas E. Nichols, Matthew Brett, Jesper L. R. Andersson, Tor D. Wager, Jean-Baptiste Poline:
Valid conjunction inference with the minimum statistic. NeuroImage 25(3): 653-660 (2005) - [c6]Dimitrios Pantazis, Darren L. Weber, Corby L. Dale, Thomas E. Nichols, Gregory V. Simpson, Richard M. Leahy:
Imaging of oscillatory behavior in event-related MEG studies. Computational Imaging 2005: 55-63 - 2004
- [j7]Satoru Hayasaka, K. Luan Phan, Israel Liberzon, Keith J. Worsley, Thomas E. Nichols:
Nonstationary cluster-size inference with random field and permutation methods. NeuroImage 22(2): 676-687 (2004) - [j6]Satoru Hayasaka, Thomas E. Nichols:
Combining voxel intensity and cluster extent with permutation test framework. NeuroImage 23(1): 54-63 (2004) - [c5]Sangtae Ahn, Jeffrey A. Fessler, Thomas E. Nichols, Robert A. Koeppe:
Covariance of Kinetic Parameter Estimators Based on Time Activity Curve Reconstructions: Preliminary Study on 1D Dynamic Imaging. ISBI 2004: 368-371 - [c4]Satoru Hayasaka, Thomas E. Nichols:
Combining Voxel Intensity And Cluster Extent With A Permutation Test Framework. ISBI 2004: 856-859 - [c3]Dimitrios Pantazis, Richard M. Leahy, Thomas E. Nichols, Martin Styner:
Statistical Surface-Based Morphometry Using a Non-Parametric Approach. ISBI 2004: 1283-1286 - 2003
- [j5]Tor D. Wager, Thomas E. Nichols:
Optimization of experimental design in fMRI: a general framework using a genetic algorithm. NeuroImage 18(2): 293-309 (2003) - [j4]Wen-Lin Luo, Thomas E. Nichols:
Diagnosis and exploration of massively univariate neuroimaging models. NeuroImage 19(3): 1014-1032 (2003) - [j3]Satoru Hayasaka, Thomas E. Nichols:
Validating cluster size inference: random field and permutation methods. NeuroImage 20(4): 2343-2356 (2003) - [c2]Dimitrios Pantazis, Thomas E. Nichols, Sylvain Baillet, Richard M. Leahy:
Spatiotemporal Localization of Significant Activation in MEG Using Permutation Tests. IPMI 2003: 512-523 - 2002
- [j2]Christopher R. Genovese, Nicole A. Lazar, Thomas E. Nichols:
Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate. NeuroImage 15(4): 870-878 (2002) - [j1]Thomas E. Nichols, Jinyi Qi, Evren Asma, Richard M. Leahy:
Spatiotemporal reconstruction of list mode PET data. IEEE Trans. Medical Imaging 21(4): 396-404 (2002)
1990 – 1999
- 1999
- [c1]Thomas E. Nichols, Jinyi Qi, Richard M. Leahy:
Continuous Time Dynamic PET Imaging Using List Mode Data. IPMI 1999: 98-111
Coauthor Index
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