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2020 – today
- 2024
[j26]Xiaoping Cen
, Wei Dong, Wei Lv, Yi Zhao, Fred Dubee, Alexios-Fotios A. Mentis, Dragomirka Jovic, Huanming Yang, Yixue Li:
Towards interpretable imaging genomics analysis: Methodological developments and applications. Inf. Fusion 102: 102032 (2024)- 2023
- [j25]Yi Wang, Hui Tang, Lichao Huang, Lulu Pan, Lixiang Yang, Huanming Yang, Feng Mu, Meng Yang:
Self-play reinforcement learning guides protein engineering. Nat. Mac. Intell. 5(8): 845-860 (2023) - [j24]Yi Wang, Hui Tang, Lichao Huang, Lulu Pan, Lixiang Yang, Huanming Yang, Feng Mu, Meng Yang:
Author Correction: Self-play reinforcement learning guides protein engineering. Nat. Mac. Intell. 5(8): 947 (2023) - [c1]Sri Priya Ponnapalli, Penelope Miron, Kristy L. S. Miskimen, Kristin A. Waite, Nadiya Sosonkina, Sara E. Coppens, Anthony C. Bryan, Estevan P. Kiernan, Huanming Yang, Jay Bowen, Ghunwa A. Nakouzi, Jill S. Barnholtz-Sloan, Andrew E. Sloan, Tiffany R. Hodges, Orly Alter:
AI/ML-Derived Whole-Genome Predictor Prospectively and Clinically Predicts Survival and Response to Treatment in Brain Cancer. SC Workshops 2023: 116-118 - 2022
- [j23]Jie Zhu, Liu Tian, Peishan Chen, Mo Han, Liju Song, Xin Tong, Xiaohuan Sun, Fangming Yang, Zhipeng Lin, Xing Liu, Chuan Liu, Xiaohan Wang, Yuxiang Lin, Kaiye Cai, Yong Hou, Xun Xu, Huanming Yang, Jian Wang, Karsten Kristiansen, Liang Xiao, Tao Zhang, Huijue Jia, Zhuye Jie:
Over 50, 000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa. Genom. Proteom. Bioinform. 20(2): 246-259 (2022) - [j22]Zhuye Jie, Chen Chen, Lilan Hao, Fei Li, Liju Song, Xiaowei Zhang, Jie Zhu, Liu Tian, Xin Tong, Kaiye Cai, Zhe Zhang, Yanmei Ju, Xinlei Yu, Ying Li, Hongcheng Zhou, Haorong Lu, Xuemei Qiu, Qiang Li, Yunli Liao, Dongsheng Zhou, Heng Lian, Yong Zuo, Xiaomin Chen, Weiqiao Rao, Yan Ren, Yuan Wang, Jin Zi, Rong Wang, Na Liu, Jinghua Wu, Wei Zhang, Xiao Liu, Yang Zong, Weibin Liu, Liang Xiao, Yong Hou, Xun Xu, Huanming Yang, Jian Wang, Karsten Kristiansen, Huijue Jia:
Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes. Genom. Proteom. Bioinform. 20(2): 304-321 (2022) - [j21]Meng Yang, Yueyuxiao Yang, Chenxi Xie, Ming Ni, Jian Liu, Huanming Yang, Feng Mu, Jian Wang:
Contrastive learning enables rapid mapping to multimodal single-cell atlas of multimillion scale. Nat. Mach. Intell. 4(8): 696-709 (2022) - [j20]Zhi Ping, Shihong Chen, Guangyu Zhou, Xiaoluo Huang, Sha Joe Zhu, Haoling Zhang, Henry H. Lee, Zhaojun Lan, Jie Cui, Tai Chen, Wenwei Zhang, Huanming Yang, Xun Xu, George M. Church, Yue Shen:
Towards practical and robust DNA-based data archiving using the yin-yang codec system. Nat. Comput. Sci. 2(4): 234-242 (2022) - 2021
- [j19]Mengyang Xu, Lidong Guo, Xiao Du, Lei Li, Brock A. Peters, Li Deng, Ou Wang, Fang Chen, Jun Wang, Zhesheng Jiang, Jinglin Han, Ming Ni, Huanming Yang, Xun Xu, Xin Liu, Jie Huang, Guangyi Fan:
Accurate haplotype-resolved assembly reveals the origin of structural variants for human trios. Bioinform. 37(15): 2095-2102 (2021) - [j18]Wei Dong, Boqing Qiang, Huanming Yang:
The international Human Genome Project: A milestone for life sciences and humanity-The three stages and three major impacts of the HGP, and three contributions by China. Quant. Biol. 9(3): 229-241 (2021) - 2020
- [j17]Wei Zhang, Longlong Wang, Ke Liu, Xiaofeng Wei, Kai Yang, Wensi Du, Shiyu Wang, Nannan Guo, Chuanchuan Ma, Lihua Luo, Jinghua Wu, Liya Lin, Fan Yang, Fei Gao, Xie Wang, Tao Li, Ruifang Zhang, Nitin K. Saksena, Huanming Yang, Jian Wang, Lin Fang, Yong Hou, Xun Xu, Xiao Liu:
PIRD: Pan Immune Repertoire Database. Bioinform. 36(3): 897-903 (2020) - [j16]Yong Zhang, Yongsheng Chen, Huixin Xu, Junbin Fang, Zijian Zhao, Weipeng Hu, Xiaoqin Yang, Jia Ye, Yun Cheng, Jiayin Wang, Weiqiang Sun, Jian Wang, Huanming Yang, Jing Yan, Lin Fang:
SOAPTyping: an open-source and cross-platform tool for sequence-based typing for HLA class I and II alleles. BMC Bioinform. 21(1): 295 (2020) - [j15]Claudia Calabrese, Natalie R. Davidson, Deniz Demircioglu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi, Cameron M. Soulette, Lara Urban, Liliana Greger, Siliang Li, Dongbing Liu, Marc D. Perry, Qian Xiang, Fan Zhang, Junjun Zhang, Peter Bailey, Serap Erkek, Katherine A. Hoadley, Yong Hou, Matthew R. Huska, Helena Kilpinen, Jan O. Korbel, Maximillian G. Marin, Julia Markowski, Tannistha Nandi, Qiang Pan-Hammarström, Chandra Sekhar Pedamallu, Reiner Siebert, Stefan G. Stark, Hong Su, Patrick Tan, Sebastian M. Waszak, Christina K. Yung, Shida Zhu, Philip Awadalla, Matthew Meyerson, B. F. Francis Ouellette, Kui Wu, Huanming Yang, Samirkumar B. Amin, Aurélien Chateigner, Isidro Cortés-Ciriano, Brian Craft, Milana Frenkel-Morgenstern, Mary Goldman, Ekta Khurana, Fabien C. Lamaze, Chang Li, Xiaobo Li, Xinyue Li, Xingmin Liu, Morten Muhlig Nielsen, Akinyemi I. Ojesina, Peter J. Park, Jakob Skou Pedersen, Bin Tean Teh, Jian Wang, Heng Xiong, Sergei Yakneen, Chen Ye, Xiuqing Zhang, Liangtao Zheng, Jingchun Zhu, Chad Creighton, Jonathan Göke, Roland F. Schwarz, Oliver Stegle, Zemin Zhang, Alvis Brazma, Gunnar Rätsch, Angela N. Brooks:
Genomic basis for RNA alterations in cancer. Nat. 578(7793): 129-136 (2020)
2010 – 2019
- 2019
- [j14]Yu Xu, Zhe Lin, Chong Tang, Yujing Tang, Yue Cai, Hongbin Zhong, Xuebin Wang, Wenwei Zhang, Chongjun Xu, Jingjing Wang, Jian Wang, Huanming Yang, Linfeng Yang, Qiang Gao:
A new massively parallel nanoball sequencing platform for whole exome research. BMC Bioinform. 20(1): 153:1-153:9 (2019) - [j13]Wenchen Song, Hai-Xi Sun, Carolyn Zhang, Li Cheng, Ye Peng, Ziqing Deng, Dan Wang, Yun Wang, Ming Hu, Wenen Liu, Huanming Yang, Yue Shen, Junhua Li, Lingchong You, Minfeng Xiao:
Prophage Hunter: an integrative hunting tool for active prophages. Nucleic Acids Res. 47(Webserver-Issue): W74-W80 (2019) - 2018
- [j12]Jia Ye, Yong Zhang, Huihai Cui, Jiawei Liu, Yuqing Wu, Yun Cheng, Huixing Xu, Xingxin Huang, Shengting Li, An Zhou, Xiuqing Zhang, Lars Bolund, Qiang Chen, Jian Wang, Huanming Yang, Lin Fang, Chunmei Shi:
WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update. Nucleic Acids Res. 46(Webserver-Issue): W71-W75 (2018) - 2017
- [j11]Junbiao Dai, Yizhi Cai, Yinjing Yuan, Huanming Yang, Jef D. Boeke:
Whole genome synthesis: from poliovirus to synthetic yeast. Quant. Biol. 5(1): 105-109 (2017) - 2015
- [j10]Shengjie Gao, Dan Zou, Likai Mao, Huayu Liu, Pengfei Song, Youguo Chen, Shancen Zhao, Changduo Gao, Xiangchun Li, Zhibo Gao, Xiaodong Fang, Huanming Yang, Torben F. Ørntoft, Karina D. Sørensen, Lars Bolund:
BS-SNPer: SNP calling in bisulfite-seq data. Bioinform. 31(24): 4006-4008 (2015) - 2010
- [j9]Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong:
Evolutionary Transients in the Rice Transcriptome. Genom. Proteom. Bioinform. 8(4): 211-228 (2010)
2000 – 2009
- 2009
- [j8]Jian Li, Kai Wang, Shengting Li, Vera Timmermans-Wielenga, Fritz Rank, Carsten Wiuf, Xiuqing Zhang, Huanming Yang, Lars Bolund:
DNA Copy Number Aberrations in Breast Cancer by Array Comparative Genomic Hybridization. Genom. Proteom. Bioinform. 7(1-2): 13-24 (2009) - [j7]Guoqing Li, Lijia Ma, Chao Song, Zhentao Yang, Xiulan Wang, Hui Huang, Yingrui Li, Ruiqiang Li, Xiuqing Zhang, Huanming Yang, Jian Wang, Jun Wang:
The YH database: the first Asian diploid genome database. Nucleic Acids Res. 37(Database-Issue): 1025-1028 (2009) - 2008
- [j6]Ximiao He, Suhua Chang, Jiajie Zhang, Qian Zhao, Haizhen Xiang, Kanthida Kusonmano, Liu Yang, Zhong Sheng Sun, Huanming Yang, Jing Wang:
MethyCancer: the database of human DNA methylation and cancer. Nucleic Acids Res. 36(Database-Issue): 836-841 (2008) - 2007
- [j5]Suhua Chang, Jiajie Zhang, Xiaoyun Liao, Xinxing Zhu, Dahai Wang, Jiang Zhu, Tao Feng, Baoli Zhu, George F. Gao, Jian Wang, Huanming Yang, Jun Yu, Jing Wang:
Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research. Nucleic Acids Res. 35(Database-Issue): 376-380 (2007) - 2005
- [j4]Jing Wang, Qingyou Xia, Ximiao He, Mingtao Dai, Jue Ruan, Jie Chen, Guo Yu, Haifeng Yuan, Yafeng Hu, Ruiqiang Li, Tao Feng, Chen Ye, Cheng Lu, Jun Wang, Songgang Li, Gane Ka-Shu Wong, Huanming Yang, Jian Wang, Zhonghuai Xiang, Zeyang Zhou, Jun Yu:
SilkDB: a knowledgebase for silkworm biology and genomics. Nucleic Acids Res. 33(Database-Issue): 399-402 (2005) - [j3]Jing Wang, Ximiao He, Jue Ruan, Mingtao Dai, Jie Chen, Yong Zhang, Yafeng Hu, Chen Ye, Shengting Li, Lijuan Cong, Lin Fang, Bin Liu, Songgang Li, Jian Wang, David W. Burt, Gane Ka-Shu Wong, Jun Yu, Huanming Yang, Jun Wang:
ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. 33(Database-Issue): 438-441 (2005) - [j2]Ruiqiang Li, Jia Ye, Songgang Li, Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong, Jun Wang:
ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun. PLoS Comput. Biol. 1(4) (2005) - 2004
- [j1]Wenming Zhao, Jing Wang, Ximiao He, Xiaobing Huang, Yongzhi Jiao, Mingtao Dai, Shulin Wei, Jian Fu, Ye Chen, Xiaoyu Ren, Yong Zhang, Peixiang Ni, Jianguo Zhang, Songgang Li, Jian Wang, Gane Ka-Shu Wong, Hongyu Zhao, Jun Yu, Huanming Yang, Jun Wang:
BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. Nucleic Acids Res. 32(Database-Issue): 377-382 (2004)
Coauthor Index
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