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ORCIDIhor Smal
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2020 – today
- 2024
[j17]Vincent J. W. Hellebrekers, Theo van Walsum
, Ihor Smal, Sandra A. P. Cornelissen, Wim H. van Zwam, Aad van der Lugt, Matthijs van der Sluijs, Ruisheng Su:
Automated image registration of cerebral digital subtraction angiography. Int. J. Comput. Assist. Radiol. Surg. 19(1): 147-150 (2024)- [j16]Anne-Wietje Zwijnen, Leon Watzema, Yanto Ridwan, Ingrid van Der Pluijm, Ihor Smal, Jeroen Essers:
Self-adaptive deep learning-based segmentation for universal and functional clinical and preclinical CT image analysis. Comput. Biol. Medicine 179: 108853 (2024) - [j15]Hélène Kabbech, Ihor Smal:
TrackSegNet: a tool for trajectory segmentation into diffusive states using supervised deep learning. J. Open Source Softw. 9(98): 6157 (2024) - [c28]Vincent J. W. Hellebrekers, Josiah B. Passmore, Lukas C. Kapitein, Ihor Smal:
An Iterative Frequency-Based Approach for Gelmap Grid Deformation Correction. ISBI 2024: 1-4 - [c27]Tijmen H. de Wolf, Daria Roman, Julie Nonnekens, Ihor Smal:
Weakly Supervised 3d Image Segmentation in Fluorescence Microscopy Using Maximum Intensity Projections. ISBI 2024: 1-4 - [i4]Yao Yao, Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Erik Meijering:
Deep Joint Denoising and Detection for Enhanced Intracellular Particle Analysis. CoRR abs/2408.07903 (2024) - 2023
- [c26]Hélène Kabbech, Jente van Staalduinen, Frank Grosveld, Ihor Smal:
Accurate Estimation of Particle Dynamics Bypassing Substrate Drift Bias: Application to Cell Nucleus Motion. ISBI 2023: 1-4 - [c25]Tijmen H. de Wolf, Matthijs Snelders, Jeroen Essers, Ihor Smal:
CA-LIME: An Algorithm that Explains Classification Results of Cardiomyocyte Beating. ISBI 2023: 1-4 - 2022
- [c24]Hélène Kabbech, Ihor Smal:
Identification of Diffusive States in Tracking Applications Using Unsupervised Deep Learning Methods. ISBI 2022: 1-4 - 2021
- [c23]Wei Zhao, Eleni Maria Manolika, Arnab Ray Chaudhuri, Ihor Smal:
Detection Of Replication Forks In Em Images Using Faster R-Cnn. ISBI 2021: 1786-1789 - 2020
- [j14]Yao Yao, Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Erik Meijering:
Deep-learning method for data association in particle tracking. Bioinform. 36(19): 4935-4941 (2020) - [j13]Hua Ma, Ihor Smal, Joost Daemen, Theo van Walsum:
Dynamic coronary roadmapping via catheter tip tracking in X-ray fluoroscopy with deep learning based Bayesian filtering. Medical Image Anal. 61: 101634 (2020) - [i3]Hua Ma, Ihor Smal, Joost Daemen, Theo van Walsum:
Dynamic Coronary Roadmapping via Catheter Tip Tracking in X-ray Fluoroscopy with Deep Learning Based Bayesian Filtering. CoRR abs/2001.03801 (2020)
2010 – 2019
- 2019
- [j12]Gadea Mata, Miroslav Radojevic, Carlos Fernandez-Lozano, Ihor Smal, Niels Werij, Miguel Morales, Erik Meijering, Julio Rubio:
Automated Neuron Detection in High-Content Fluorescence Microscopy Images Using Machine Learning. Neuroinformatics 17(2): 253-269 (2019) - [c22]Herman Bergwerf, Malik Bechakra, Ihor Smal, Joost L. M. Jongen, Erik Meijering:
Nerve Fiber Segmentation in Bright-Field Microscopy Images of Skin Biopsies Using Deep Learning. ISBI 2019: 232-235 - [c21]Ihor Smal, Yao Yao, Niels Galjart, Erik Meijering:
Facilitating Data Association In Particle Tracking Using Autoencoding And Score Matching. ISBI 2019: 1523-1526 - 2018
- [c20]Yao Yao, Ihor Smal, Erik Meijering:
Deep neural networks for data association in particle tracking. ISBI 2018: 458-461 - [c19]Ihor Smal, Niels Galjart, Erik Meijering:
Accurate estimation of intracellular dynamics and underlying spatial structures using hierarchical trajectory smoothing. ISBI 2018: 973-976 - 2017
- [j11]Wei Sun, Dirk H. J. Poot, Ihor Smal, Xuan Yang, Wiro J. Niessen, Stefan Klein:
Stochastic optimization with randomized smoothing for image registration. Medical Image Anal. 35: 146-158 (2017) - [j10]Pierre Ambrosini, Ihor Smal, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum:
A Hidden Markov Model for 3D Catheter Tip Tracking With 2D X-ray Catheterization Sequence and 3D Rotational Angiography. IEEE Trans. Medical Imaging 36(3): 757-768 (2017) - [c18]Ihor Smal, Sreya Basu, Laura Sayas, Niels Galjart, Erik Meijering:
Gaussian processes for trajectory analysis in microtubule tracking applications. ISBI 2017: 206-209 - 2016
- [j9]Isabel Schlangen, Jose Franco, Jeremie Houssineau, William T. E. Pitkeathly, Daniel Edward Clark, Ihor Smal, Colin Rickman:
Marker-Less Stage Drift Correction in Super-Resolution Microscopy Using the Single-Cluster PHD Filter. IEEE J. Sel. Top. Signal Process. 10(1): 193-202 (2016) - [j8]Miroslav Radojevic, Ihor Smal, Erik Meijering:
Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. Neuroinformatics 14(2): 201-219 (2016) - [c17]Ihor Smal, Erik Meijering:
Poisson Point Processes for Solving Stochastic Inverse Problems in Fluorescence Microscopy. ECCV Workshops (1) 2016: 326-338 - [c16]Gadea Mata, Miroslav Radojevic, Ihor Smal, Miguel Morales, Erik Meijering, Julio Rubio:
Automatic detection of neurons in high-content microscope images using machine learning approaches. ISBI 2016: 330-333 - 2015
- [j7]Ihor Smal, Erik Meijering:
Quantitative comparison of multiframe data association techniques for particle tracking in time-lapse fluorescence microscopy. Medical Image Anal. 24(1): 163-189 (2015) - [c15]Miroslav Radojevic, Ihor Smal, Erik Meijering:
Automated neuron morphology reconstruction using fuzzy-logic detection and Bayesian tracing algorithms. ISBI 2015: 885-888 - [c14]Pierre Ambrosini, Ihor Smal, Daniel Ruijters, Wiro J. Niessen, Adriaan Moelker, Theo van Walsum:
3D Catheter Tip Tracking in 2D X-Ray Image Sequences Using a Hidden Markov Model and 3D Rotational Angiography. AE-CAI 2015: 38-49 - 2014
- [c13]Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini:
An adaptive distributed resampling algorithm with non-proportional allocation. ICASSP 2014: 1635-1639 - [c12]Miroslav Radojevic, Ihor Smal, Wiro J. Niessen, Erik Meijering:
Fuzzy logic based detection of neuron bifurcations in microscopy images. ISBI 2014: 1307-1310 - 2013
- [i2]Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini:
PPF - A Parallel Particle Filtering Library. CoRR abs/1310.5045 (2013) - [i1]Ömer Demirel, Ihor Smal, Wiro J. Niessen, Erik Meijering, Ivo F. Sbalzarini:
Piecewise Constant Sequential Importance Sampling for Fast Particle Filtering. CoRR abs/1310.5541 (2013) - 2012
- [j6]Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Piotr Wielopolski, Adriaan Moelker, Tirza Springeling, Monique Bernsen, Wiro J. Niessen, Erik Meijering:
Reversible jump MCMC methods for fully automatic motion analysis in tagged MRI. Medical Image Anal. 16(1): 301-324 (2012) - 2011
- [c11]Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik Meijering:
Quantitative comparison of tracking methods for motion analysis in tagged MRI. ISBI 2011: 345-348 - [c10]Noemí Carranza-Herrezuelo, Ihor Smal, Oleh Dzyubachyk, Wiro J. Niessen, Erik Meijering:
Automated lineage tree reconstruction from Caenorhabditis elegans image data using particle filtering based cell tracking. ISBI 2011: 1921-1924 - [c9]Ihor Smal, Noemí Carranza-Herrezuelo, Stefan Klein, Wiro J. Niessen, Erik Meijering:
Trans-Dimensional MCMC Methods for Fully Automatic Motion Analysis in Tagged MRI. MICCAI (1) 2011: 573-580 - 2010
- [j5]Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Wiro J. Niessen, Erik Meijering:
Microtubule Dynamics Analysis Using Kymographs and Variable-Rate Particle Filters. IEEE Trans. Image Process. 19(7): 1861-1876 (2010) - [j4]Ihor Smal, Marco Loog, Wiro J. Niessen, Erik Meijering:
Quantitative Comparison of Spot Detection Methods in Fluorescence Microscopy. IEEE Trans. Medical Imaging 29(2): 282-301 (2010) - [c8]Ihor Smal, Wiro J. Niessen, Erik Meijering:
Particle filtering methods for motion analysis in tagged MRI. ISBI 2010: 488-491
2000 – 2009
- 2009
- [c7]Ihor Smal, Marco Loog, Wiro J. Niessen, Erik Meijering:
Quantitative Comparison of Spot Detection Methods in Live-Cell Fluorescence Microscopy Imaging. ISBI 2009: 1175-1178 - 2008
- [j3]Ihor Smal, Erik Meijering, Katharina Draegestein, Niels Galjart, Ilya Grigoriev, Anna Akhmanova, M. E. van Royen, Adriaan B. Houtsmuller, Wiro J. Niessen:
Multiple object tracking in molecular bioimaging by Rao-Blackwellized marginal particle filtering. Medical Image Anal. 12(6): 764-777 (2008) - [j2]Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik Meijering:
Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images: Application to Microtubule Growth Analysis. IEEE Trans. Medical Imaging 27(6): 789-804 (2008) - [c6]Ihor Smal, Wiro J. Niessen, Erik Meijering:
A new detection scheme for multiple object tracking in fluorescence microscopy by joint probabilistic data association filtering. ISBI 2008: 264-267 - 2007
- [c5]Michiel Schaap, Ihor Smal, Coert Metz, Theo van Walsum, Wiro J. Niessen:
Bayesian Tracking of Elongated Structures in 3D Images. IPMI 2007: 74-85 - [c4]Ihor Smal, Katharina Draegestein, Niels Galjart, Wiro J. Niessen, Erik Meijering:
Rao-Blackwellized Marginal Particle Filtering for Multiple Object Tracking in Molecular Bioimaging. IPMI 2007: 110-121 - [c3]Ihor Smal, Wiro J. Niessen, Erik Meijering:
Advanced Particle Filtering for Multiple Object Tracking in Dynamic Fluorescence Microscopy Images. ISBI 2007: 1048-1051 - [c2]Michiel Schaap, Rashindra Manniesing, Ihor Smal, Theo van Walsum, Aad van der Lugt, Wiro J. Niessen:
Bayesian Tracking of Tubular Structures and Its Application to Carotid Arteries in CTA. MICCAI (2) 2007: 562-570 - 2006
- [j1]Erik Meijering, Ihor Smal, Gaudenz Danuser:
Tracking in molecular bioimaging. IEEE Signal Process. Mag. 23(3): 46-53 (2006) - [c1]Ihor Smal, Wiro J. Niessen, Erik Meijering:
Bayesian tracking for fluorescence microscopic imaging. ISBI 2006: 550-553
Coauthor Index
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