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ORCIDNatasa Jonoska
Natasha Jonoska – Nataša Jonoska
Person information
- unicode name: Nataša Jonoska
- affiliation: University of South Florida, Department of Mathematics and Statistics
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2020 – today
- 2022
[i4]Jérôme Durand-Lose, Hendrik Jan Hoogeboom, Natasa Jonoska:
Deterministic Non-cooperative Binding in Two-Dimensional Tile Assembly Systems Must Have Ultimately Periodic Paths. CoRR abs/2202.05165 (2022)- 2021
- [j49]Natasa Jonoska, Dmytro Savchuk
:
Preface. Int. J. Found. Comput. Sci. 32(6): 615-617 (2021) - [j48]James Garrett, Natasa Jonoska, Hwee Kim, Masahico Saito:
DNA origami words, graphical structures and their rewriting systems. Nat. Comput. 20(2): 217-231 (2021) - [j47]David Doty, Rudolf Freund, Natasa Jonoska, Jarkko Kari:
Preface. Nat. Comput. 20(4): 637-638 (2021) - 2020
- [j46]Daniel A. Cruz, Margherita Maria Ferrari, Natasa Jonoska, Lukas Nabergall, Masahico Saito:
Insertions Yielding Equivalent Double Occurrence Words. Fundam. Informaticae 171(1-4): 113-132 (2020) - [j45]Daniela Genova, Hendrik Jan Hoogeboom, Natasa Jonoska:
Companions and an Essential Motion of a Reaction System. Fundam. Informaticae 175(1-4): 187-199 (2020) - [j44]Natasa Jonoska, Masahico Saito, Hwee Kim, Brad Mostowski:
Symbol Separation in Double Occurrence Words. Int. J. Found. Comput. Sci. 31(7): 915-928 (2020) - [c39]Abdulmelik Mohammed, Natasa Jonoska, Masahico Saito:
The Topology of Scaffold Routings on Non-Spherical Mesh Wireframes. DNA 2020: 1:1-1:17 - [e10]Natasa Jonoska, Dmytro Savchuk:
Developments in Language Theory - 24th International Conference, DLT 2020, Tampa, FL, USA, May 11-15, 2020, Proceedings. Lecture Notes in Computer Science 12086, Springer 2020, ISBN 978-3-030-48515-3 [contents]
2010 – 2019
- 2019
- [c38]James Garrett, Natasa Jonoska, Hwee Kim, Masahico Saito:
Algebraic Systems Motivated by DNA Origami. CAI 2019: 164-176 - [c37]James Garrett, Natasa Jonoska, Hwee Kim, Masahico Saito:
DNA Origami Words and Rewriting Systems. UCNC 2019: 94-107 - [i3]Jérôme Durand-Lose, Hendrik Jan Hoogeboom, Natasa Jonoska:
Deterministic 2-Dimensional Temperature-1 Tile Assembly Systems Cannot Compute. CoRR abs/1901.08575 (2019) - 2018
- [j43]Natasha Jonoska, Gheorghe Paun, Grzegorz Rozenberg:
Obituary for Tom Head. Bull. EATCS 124 (2018) - [i2]Daniel A. Cruz, Margherita Maria Ferrari, Natasa Jonoska, Lukas Nabergall, Masahico Saito:
Transformations on Double Occurrence Words Motivated by DNA Rearrangement. CoRR abs/1811.11739 (2018) - 2017
- [j42]Natasa Jonoska, Lukas Nabergall, Masahico Saito:
Patterns and Distances in Words Related to DNA Rearrangement. Fundam. Informaticae 154(1-4): 225-238 (2017) - [j41]Daniela Genova, Hendrik Jan Hoogeboom, Natasa Jonoska:
A graph isomorphism condition and equivalence of reaction systems. Theor. Comput. Sci. 701: 109-119 (2017) - [c36]Jasper Braun, Daniel A. Cruz, Natasa Jonoska:
Platform Color Designs for Interactive Molecular Arrangements. UCNC 2017: 69-81 - 2016
- [j40]Jonathan Burns, Denys Kukushkin, Kelsi Lindblad, Xiao Chen, Natasa Jonoska, Laura F. Landweber:
<mds_ies_db>: a database of ciliate genome rearrangements. Nucleic Acids Res. 44(Database-Issue): 703-709 (2016) - [j39]Natasa Jonoska, Mile Krajcevski, Gregory L. McColm:
Counter machines and crystallographic structures. Nat. Comput. 15(1): 97-113 (2016) - [c35]Natasa Jonoska, Milé Krajcevski, Gregory L. McColm:
Traversal Languages Capturing Isomorphism Classes of Sierpiński Gaskets. UCNC 2016: 155-167 - [e9]Arnold Beckmann, Laurent Bienvenu, Natasa Jonoska:
Pursuit of the Universal - 12th Conference on Computability in Europe, CiE 2016, Paris, France, June 27 - July 1, 2016, Proceedings. Lecture Notes in Computer Science 9709, Springer 2016, ISBN 978-3-319-40188-1 [contents] - 2015
- [j38]Dorothy Buck, Egor Dolzhenko, Natasa Jonoska, Masahico Saito, Karin Valencia:
Genus Ranges of 4-Regular Rigid Vertex Graphs. Electron. J. Comb. 22(3): 3 (2015) - [j37]Paola Bonizzoni, Natasa Jonoska:
Existence of constants in regular splicing languages. Inf. Comput. 242: 340-353 (2015) - [j36]Natasa Jonoska, Daria Karpenko, Shinnosuke Seki:
Dynamic Simulation of 1D Cellular Automata in the Active aTAM. New Gener. Comput. 33(3): 271-295 (2015) - 2014
- [j35]Natasa Jonoska, Daria Karpenko:
Active Tile Self-assembly, Part 1: Universality at temperature 1. Int. J. Found. Comput. Sci. 25(2): 141-164 (2014) - [j34]Natasa Jonoska, Daria Karpenko:
Active Tile Self-assembly, Part 2: Self-Similar Structures and Structural Recursion. Int. J. Found. Comput. Sci. 25(2): 165-194 (2014) - [j33]Jérôme Durand-Lose, Natasa Jonoska:
Preface. Nat. Comput. 13(2): 193-194 (2014) - [c34]Natasa Jonoska, Florin Manea, Shinnosuke Seki:
A Stronger Square Conjecture on Binary Words. SOFSEM 2014: 339-350 - [c33]Natasa Jonoska, Mile Krajcevski, Gregory L. McColm:
Languages Associated with Crystallographic Symmetry. UCNC 2014: 216-228 - [e8]Natasa Jonoska, Masahico Saito:
Discrete and Topological Models in Molecular Biology. Natural Computing Series, Springer 2014, ISBN 978-3-642-40192-3 [contents] - 2013
- [j32]Jonathan Burns, Egor Dolzhenko, Natasa Jonoska, Tilahun Muche, Masahico Saito:
Four-regular graphs with rigid vertices associated to DNA recombination. Discret. Appl. Math. 161(10-11): 1378-1394 (2013) - 2012
- [j31]Egor Dolzhenko, Natasa Jonoska:
Two-Dimensional Languages and Cellular Automata. Int. J. Found. Comput. Sci. 23(1): 185-206 (2012) - [j30]Daniela Genova, Natasa Jonoska:
Forbidding and enforcing on graphs. Theor. Comput. Sci. 429: 108-117 (2012) - [j29]Angela Angeleska, Natasa Jonoska, Masahico Saito:
Rewriting rule chains modeling DNA rearrangement pathways. Theor. Comput. Sci. 454: 5-22 (2012) - [p1]Robert Brijder, Mark Daley, Tero Harju, Natasa Jonoska, Ion Petre, Grzegorz Rozenberg:
Computational Nature of Gene Assembly in Ciliates. Handbook of Natural Computing 2012: 1233-1280 - [e7]Jérôme Durand-Lose, Natasa Jonoska:
Unconventional Computation and Natural Computation - 11th International Conference, UCNC 2012, Orléan, France, September 3-7, 2012. Proceedings. Lecture Notes in Computer Science 7445, Springer 2012, ISBN 978-3-642-32893-0 [contents] - [i1]Natasha Jonoska, Daria Karpenko:
Active Tile Self-assembly, Self-similar Structures and Recursion. CoRR abs/1211.3085 (2012) - 2011
- [j28]Natasha Jonoska, Gregory L. McColm, Ana Staninska:
On stoichiometry for the assembly of flexible tile DNA complexes. Nat. Comput. 10(3): 1121-1141 (2011) - [c32]Paola Bonizzoni, Natasha Jonoska:
Regular Splicing Languages Must Have a Constant. Developments in Language Theory 2011: 82-92 - 2010
- [j27]Egor Dolzhenko, Natasa Jonoska, Nadrian C. Seeman:
Transducer generated arrays of robotic nano-arms. Nat. Comput. 9(2): 437-455 (2010) - [c31]Natasa Jonoska, Masahico Saito:
DNA Rearrangements through Spatial Graphs. CiE 2010: 211-218 - [c30]Natasa Jonoska, Nadrian C. Seeman:
Finite State Automata by DNA Self-assembly. ICT Innovations 2010: 1-4 - [c29]Natasa Jonoska:
Using Automata to Describe Self-Assembled Nanostructures. CIAA 2010: 1-3
2000 – 2009
- 2009
- [j26]Gang Wu, Natasha Jonoska, Nadrian C. Seeman:
Construction of a DNA nano-object directly demonstrates computation. Biosyst. 98(2): 80-84 (2009) - [j25]Angela Angeleska, Natasa Jonoska, Masahico Saito:
DNA recombination through assembly graphs. Discret. Appl. Math. 157(14): 3020-3037 (2009) - [j24]Matteo Cavaliere, Natasa Jonoska, Peter Leupold:
DNA splicing: computing by observing. Nat. Comput. 8(1): 157-170 (2009) - [j23]Natasa Jonoska, Gregory L. McColm:
Complexity classes for self-assembling flexible tiles. Theor. Comput. Sci. 410(4-5): 332-346 (2009) - [j22]Natasa Jonoska, Jarkko Kari:
Preface. Theor. Comput. Sci. 410(15): 1415-1416 (2009) - [j21]Natasa Jonoska, Nadrian C. Seeman, Gang Wu:
On existence of reporter strands in DNA-based graph structures. Theor. Comput. Sci. 410(15): 1448-1460 (2009) - [j20]Natasa Jonoska, Jarkko Kari:
Preface. Theor. Comput. Sci. 410(16): 1475-1476 (2009) - [j19]Natasa Jonoska, Joni Burnette Pirnot:
Finite state automata representing two-dimensional subshifts. Theor. Comput. Sci. 410(37): 3504-3512 (2009) - [c28]Angela Angeleska, Natasa Jonoska, Masahico Saito, Laura F. Landweber:
Strategies for RNA-Guided DNA Recombination. Algorithmic Bioprocesses 2009: 83-98 - [c27]Natasa Jonoska, Anne Taormina, Reidun Twarock:
DNA Cages with Icosahedral Symmetry in Bionanotechnology. Algorithmic Bioprocesses 2009: 141-158 - [c26]Marcella Anselmo, Natasha Jonoska, Maria Madonia:
Framed Versus Unframed Two-Dimensional Languages. SOFSEM 2009: 79-92 - 2008
- [j18]Giuditta Franco, Natasa Jonoska, Barbara Osborn, Anna Plaas:
Knee joint injury and repair modeled by membrane systems. Biosyst. 91(3): 473-488 (2008) - [j17]Natasa Jonoska, Lila Kari, Kalpana Mahalingam:
Involution Solid and Join codes. Fundam. Informaticae 86(1-2): 127-142 (2008) - [c25]Natasa Jonoska, Gregory L. McColm:
Describing Self-assembly of Nanostructures. SOFSEM 2008: 66-73 - [c24]Egor Dolzhenko, Natasa Jonoska:
On Complexity of Two Dimensional Languages Generated by Transducers. CIAA 2008: 181-190 - 2007
- [c23]Natasa Jonoska, Joni Burnette Pirnot:
Finite State Automata Representing Two-Dimensional Subshifts. CIAA 2007: 277-289 - 2006
- [j16]Natasa Jonoska:
Biomolecular Automata. Bull. EATCS 88: 141-166 (2006) - [j15]Natasa Jonoska:
Theoretical and Experimental DNA Computation. Genet. Program. Evolvable Mach. 7(3): 287-291 (2006) - [j14]Natasa Jonoska, Joni Burnette Pirnot:
Transitivity in Two-dimensional Local Languages Defined by Dot Systems. Int. J. Found. Comput. Sci. 17(2): 435-464 (2006) - [j13]Daniela Genova, Natasa Jonoska:
Topological Properties of Forbidding-Enforcing Systems. J. Autom. Lang. Comb. 11(4): 375-397 (2006) - [c22]Natasa Jonoska, Lila Kari, Kalpana Mahalingam:
Involution Solid and Join Codes. Developments in Language Theory 2006: 192-202 - [c21]Natasa Jonoska, Gregory L. McColm, Ana Staninska:
Spectrum of a Pot for DNA Complexes. DNA 2006: 83-94 - [c20]Giuditta Franco, Natasa Jonoska:
Forbidding - Enforcing Conditions in DNA Self-assembly of Graphs. Nanotechnology: Science and Computation 2006: 105-118 - [c19]Natasa Jonoska, Gregory L. McColm:
Flexible Versus Rigid Tile Assembly. UC 2006: 139-151 - [e6]Junghuei Chen, Natasa Jonoska, Grzegorz Rozenberg:
Nanotechnology: Science and Computation. Natural Computing Series, Springer 2006, ISBN 978-3-540-30295-7 [contents] - 2005
- [j12]Natasa Jonoska, Kalpana Mahalingam, Junghuei Chen:
Involution codes: with application to DNA coded languages. Nat. Comput. 4(2): 141-162 (2005) - [c18]Matteo Cavaliere, Natasa Jonoska, Peter Leupold:
Recognizing DNA Splicing. DNA 2005: 12-26 - [c17]Natasa Jonoska, Gregory L. McColm, Ana Staninska:
Expectation and Variance of Self-assembled Graph Structures. DNA 2005: 144-157 - [c16]Ruojie Sha, Xiaoping Zhang, Shiping Liao, Pamela E. Constantinou, Baoquan Ding, Tong Wang, Alejandra V. Garibotti, Hong Zhong, Lisa B. Israel, Xing Wang, Gang Wu, Banani Chakraborty, Junghuei Chen, Yuwen Zhang, Hao Yan, Zhiyong Shen, Wanqiu Shen, Phiset Sa-Ardyen, Jens Kopatsch, Jiwen Zheng, Philip S. Lukeman, William B. Sherman, Chengde Mao, Natasa Jonoska, Nadrian C. Seeman:
Structural DNA Nanotechnology: Molecular Construction and Computation. UC 2005: 20-31 - [c15]Natasa Jonoska, Gregory L. McColm:
A Computational Model for Self-assembling Flexible Tiles. UC 2005: 142-156 - 2004
- [j11]Natasa Jonoska, Maurice Margenstern:
Tree Operations in P Systems and lamda-Calculus. Fundam. Informaticae 59(1): 67-90 (2004) - [j10]Natasa Jonoska:
Trends in Computing with DNA. J. Comput. Sci. Technol. 19(1): 98-113 (2004) - [j9]Natasa Jonoska, Gheorghe Paun:
Membrane Computing. New Gener. Comput. 22(4): 297-298 (2004) - [c14]Natasa Jonoska, Shiping Liao, Nadrian C. Seeman:
Transducers with Programmable Input by DNA Self-assembly. Aspects of Molecular Computing 2004: 219-240 - [c13]Natasa Jonoska, Kalpana Mahalingam:
Methods for Constructing Coded DNA Languages. Aspects of Molecular Computing 2004: 241-253 - [c12]Natasa Jonoska, Masahico Saito:
Algebraic and Topological Models for DNA Recombinant Processes. Developments in Language Theory 2004: 49-62 - [c11]Matteo Cavaliere, Natasa Jonoska, Sivan Yogev, Ron Piran, Ehud Keinan, Nadrian C. Seeman:
Biomolecular Implementation of Computing Devices with Unbounded Memory. DNA 2004: 35-49 - [c10]Loïc Colson, Natasa Jonoska, Maurice Margenstern:
lambda-P Systems and Typed lambda-Calculus. Workshop on Membrane Computing 2004: 1-18 - [e5]Natasa Jonoska, Gheorghe Paun, Grzegorz Rozenberg:
Aspects of Molecular Computing, Essays Dedicated to Tom Head on the Occasion of His 70th Birthday. Lecture Notes in Computer Science 2950, Springer 2004, ISBN 3-540-20781-3 [contents] - 2003
- [j8]Rodica Ceterchi, Radu Gramatovici, Natasa Jonoska, K. G. Subramanian:
Tissue-like P Systems with Active Membranes for Picture Generation. Fundam. Informaticae 56(4): 311-328 (2003) - [j7]Natasa Jonoska, Phiset Sa-Ardyen, Nadrian C. Seeman:
Computation by Self-assembly of DNA Graphs. Genet. Program. Evolvable Mach. 4(2): 123-137 (2003) - [j6]Matteo Cavaliere, Natasa Jonoska:
Forbidding and enforcing in membrane computing. Nat. Comput. 2(3): 215-228 (2003) - [j5]Phiset Sa-Ardyen, Natasa Jonoska, Nadrian C. Seeman:
Self-assembling DNA graphs. Nat. Comput. 2(4): 427-438 (2003) - [c9]Ethan M. Coven, Natasa Jonoska:
DNA Hybridization, Shifts of Finite Type, and Tiling of the Integers. Grammars and Automata for String Processing 2003: 369-380 - [c8]Natasa Jonoska, Kalpana Mahalingam:
Languages of DNA Based Code Words. DNA 2003: 61-73 - [c7]Rodica Ceterchi, Radu Gramatovici, Natasa Jonoska:
Tiling Rectangular Pictures with P Systems. Workshop on Membrane Computing 2003: 88-103 - [e4]Erick Cantú-Paz, James A. Foster, Kalyanmoy Deb, Lawrence Davis, Rajkumar Roy, Una-May O'Reilly, Hans-Georg Beyer, Russell K. Standish, Graham Kendall, Stewart W. Wilson, Mark Harman, Joachim Wegener, Dipankar Dasgupta, Mitchell A. Potter, Alan C. Schultz, Kathryn A. Dowsland, Natasa Jonoska, Julian F. Miller:
Genetic and Evolutionary Computation - GECCO 2003, Genetic and Evolutionary Computation Conference, Chicago, IL, USA, July 12-16, 2003. Proceedings, Part I. Lecture Notes in Computer Science 2723, Springer 2003, ISBN 3-540-40602-6 [contents] - [e3]Erick Cantú-Paz, James A. Foster, Kalyanmoy Deb, Lawrence Davis, Rajkumar Roy, Una-May O'Reilly, Hans-Georg Beyer, Russell K. Standish, Graham Kendall, Stewart W. Wilson, Mark Harman, Joachim Wegener, Dipankar Dasgupta, Mitchell A. Potter, Alan C. Schultz, Kathryn A. Dowsland, Natasa Jonoska, Julian F. Miller:
Genetic and Evolutionary Computation - GECCO 2003, Genetic and Evolutionary Computation Conference, Chicago, IL, USA, July 12-16, 2003. Proceedings, Part II. Lecture Notes in Computer Science 2724, Springer 2003, ISBN 3-540-40603-4 [contents] - 2002
- [c6]Phiset Sa-Ardyen, Natasa Jonoska, Nadrian C. Seeman:
Self-assembling DNA Graphs. DNA 2002: 1-9 - [c5]Natasa Jonoska, David Kephart, Kalpana Mahalingam:
Generating DNA Code Words. GECCO Late Breaking Papers 2002: 240-246 - [e2]Natasa Jonoska, Nadrian C. Seeman:
DNA Computing, 7th International Workshop on DNA-Based Computers, DNA7, Tampa, Florida, USA, June 10-13, 2001, Revised Papers. Lecture Notes in Computer Science 2340, Springer 2002, ISBN 3-540-43775-4 [contents] - [e1]William B. Langdon, Erick Cantú-Paz, Keith E. Mathias, Rajkumar Roy, David Davis, Riccardo Poli, Karthik Balakrishnan, Vasant G. Honavar, Günter Rudolph, Joachim Wegener, Larry Bull, Mitchell A. Potter, Alan C. Schultz, Julian F. Miller, Edmund K. Burke, Natasa Jonoska:
GECCO 2002: Proceedings of the Genetic and Evolutionary Computation Conference, New York, USA, 9-13 July 2002. Morgan Kaufmann 2002, ISBN 1-55860-878-8 [contents] - 2001
- [j4]Doris Fiebig, Ulf-Rainer Fiebig, Natasa Jonoska:
Multiplicities of covers for sofic shifts. Theor. Comput. Sci. 262(1): 349-375 (2001) - [c4]Natasa Jonoska, Masahico Saito:
Boundary Components of Thickened Graphs. DNA 2001: 70-81
1990 – 1999
- 1998
- [j3]Cvetko D. Mitrovski, Ljupco Kocarev, Natasa Jonoska:
On a class of Nth order digital filters operating outside the region of stability. Int. J. Circuit Theory Appl. 26(2): 199-205 (1998) - 1997
- [c3]Natasa Jonoska, Stephen A. Karl, Masahico Saito:
Creating 3-dimensional graph structures with DNA. DNA Based Computers 1997: 123-135 - 1996
- [j2]Natasa Jonoska:
Sofic Shifts with Synchronizing Presentations. Theor. Comput. Sci. 158(1&2): 81-115 (1996) - [c2]Natasa Jonoska, Stephen A. Karl:
A molecular computation of the road coloring problem. DNA Based Computers 1996: 87-96 - 1994
- [j1]Natasa Jonoska, Brian H. Marcus:
Minimal presentations for irreducible sofic shifts. IEEE Trans. Inf. Theory 40(6): 1818-1825 (1994) - 1992
- [c1]Natasa Jonoska:
Spinal Cellular Automata. ICCI 1992: 18-21
Coauthor Index
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