default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDJens Meiler
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j37]Yidan Tang
, Rocco Moretti, Jens Meiler:
Recent Advances in Automated Structure-Based De Novo Drug Design. J. Chem. Inf. Model. 64(6): 1794-1805 (2024)- [j36]Fengling Li, Suzanne Ackloo, Cheryl H. Arrowsmith, Fuqiang Ban, Christopher J. Barden, Hartmut Beck, Jan Beránek, Francois Berenger, Albina Bolotokova, Guillaume Bret, Marko Breznik, Emanuele Carosati, Irene Chau, Yu Chen, Artem Cherkasov, Dennis Della Corte, Katrin Denzinger, Aiping Dong, Sorin Draga, Ian Dunn, Kristina Edfeldt, Aled M. Edwards, Merveille K. I. Eguida, Paul Eisenhuth, Lukas Friedrich, Alexander Fuerll, Spencer S. Gardiner, Francesco Gentile, Pegah Ghiabi, Elisa Gibson, Marta Glavatskikh, Christoph Gorgulla, Judith Guenther, Anders Gunnarsson, Filipp Gusev, Evgeny Gutkin, Levon Halabelian, Rachel J. Harding, Alexander Hillisch, Laurent Hoffer, Anders Hogner, Scott Houliston, John J. Irwin, Olexandr Isayev, Aleksandra Ivanova, Célien Jacquemard, Austin J. Jarrett, Jan H. Jensen, Dmitri Kireev, Julian Kleber, S. Benjamin Koby, David Koes, Ashutosh Kumar, Maria G. Kurnikova, Alina Kutlushina, Uta F. Lessel, Fabian Liessmann, Sijie Liu, Wei Lu, Jens Meiler, Akhila Mettu, Guzel Minibaeva, Rocco Moretti, Connor J. Morris, Chamali Narangoda, Theresa Noonan, Leon Obendorf, Szymon Pach, Amit Pandit, Sumera Perveen, Gennady Poda, Pavel G. Polishchuk, Kristina Puls, Vera Pütter, Didier Rognan, Dylan Roskams-Edris, Christina E. M. Schindler, François Sindt, Vojtech Spiwok, Casper Steinmann, Rick L. Stevens, Valerij Talagayev, Damon Tingey, Oanh Vu, W. Patrick Walters, Xiaowen Wang, Zhenyu Wang, Gerhard Wolber, Clemens Alexander Wolf, Lars Wortmann, Hong Zeng, Carlos A. Zepeda, Kam Y. J. Zhang, Jixian Zhang, Shuangjia Zheng, Matthieu Schapira:
CACHE Challenge #1: Targeting the WDR Domain of LRRK2, A Parkinson's Disease Associated Protein. J. Chem. Inf. Model. 64(22): 8521-8536 (2024) - [j35]Moritz Ertelt, Vikram Khipple Mulligan, Jack B. Maguire, Sergey Lyskov, Rocco Moretti, Torben Schiffner, Jens Meiler, Clara T. Schoeder:
Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins. PLoS Comput. Biol. 20(3): 1011939 (2024) - [i3]Yunchao Liu, Ha Dong, Xin Wang, Rocco Moretti, Yu Wang, Zhaoqian Su, Jiawei Gu, Bobby Bodenheimer, Charles David Weaver, Jens Meiler, Tyler Derr:
WelQrate: Defining the Gold Standard in Small Molecule Drug Discovery Benchmarking. CoRR abs/2411.09820 (2024) - 2023
- [j34]Brennica Marlow, Georg Kuenze, Jens Meiler, Julia Koehler Leman:
Docking cholesterol to integral membrane proteins with Rosetta. PLoS Comput. Biol. 19(3) (2023) - [c13]Yunchao Liu, Yu Wang, Oanh Vu, Rocco Moretti, Bobby Bodenheimer, Jens Meiler, Tyler Derr:
Interpretable Chirality-Aware Graph Neural Network for Quantitative Structure Activity Relationship Modeling in Drug Discovery. AAAI 2023: 14356-14364 - 2022
- [j33]Saksham Phul, Georg Kuenze, Carlos G. Vanoye, Charles R. Sanders, Alfred L. George Jr., Jens Meiler:
Predicting the functional impact of KCNQ1 variants with artificial neural networks. PLoS Comput. Biol. 18(4) (2022) - [j32]Marion F. S. Fischer, James E. Crowe Jr., Jens Meiler:
Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods. PLoS Comput. Biol. 18(12): 1010230 (2022) - 2021
- [j31]Jeffrey L. Mendenhall, Benjamin P. Brown, Sandeepkumar Kothiwale, Jens Meiler:
BCL: : Conf: Improved Open-Source Knowledge-Based Conformation Sampling Using the Crystallography Open Database. J. Chem. Inf. Model. 61(1): 189-201 (2021) - [j30]Benjamin P. Brown, Jeffrey L. Mendenhall, Alexander R. Geanes, Jens Meiler:
General Purpose Structure-Based Drug Discovery Neural Network Score Functions with Human-Interpretable Pharmacophore Maps. J. Chem. Inf. Model. 61(2): 603-620 (2021) - [j29]Samuel Schmitz, Moritz Ertelt, Rainer Merkl, Jens Meiler:
Rosetta design with co-evolutionary information retains protein function. PLoS Comput. Biol. 17(1) (2021) - [j28]Alican Gulsevin, Jens Meiler:
Prediction of amphipathic helix - membrane interactions with Rosetta. PLoS Comput. Biol. 17(3) (2021) - [j27]Diego del Alamo, Kevin L. Jagessar, Jens Meiler, Hassane S. Mchaourab:
Methodology for rigorous modeling of protein conformational changes by Rosetta using DEER distance restraints. PLoS Comput. Biol. 17(6) (2021) - [j26]Nina G. Bozhanova, Joel M. Harp, Brian Joseph Bender, Alexey S. Gavrikov, Dmitry A. Gorbachev, Mikhail S. Baranov, Christina B. Mercado, Xuan Zhang, Konstantin A. Lukyanov, Alexander S. Mishin, Jens Meiler:
Computational redesign of a fluorogen activating protein with Rosetta. PLoS Comput. Biol. 17(11) (2021) - 2020
- [j25]Cinque S. Soto, Jessica A. Finn, Jordan R. Willis, Samuel B. Day, Robert S. Sinkovits, Taylor Jones, Samuel Schmitz, Jens Meiler, Andre Branchizio, James E. Crowe Jr.:
PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. BMC Bioinform. 21(1): 314 (2020) - [j24]Marion F. Sauer, Alexander M. Sevy, James E. Crowe Jr., Jens Meiler:
Multi-state design of flexible proteins predicts sequences optimal for conformational change. PLoS Comput. Biol. 16(2) (2020) - [j23]Julia Koehler Leman, Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W. Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William R. Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland L. Dunbrack Jr., Tanja Kortemme, Andrew Leaver-Fay, Charlie E. M. Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J. Gray, Richard Bonneau:
Better together: Elements of successful scientific software development in a distributed collaborative community. PLoS Comput. Biol. 16(5) (2020) - [j22]Brian Joseph Bender, Brennica Marlow, Jens Meiler:
Improving homology modeling from low-sequence identity templates in Rosetta: A case study in GPCRs. PLoS Comput. Biol. 16(10) (2020) - [c12]Vladimir Golkov, Marcin J. Skwark, Atanas Mirchev, Georgi Dikov, Alexander R. Geanes, Jeffrey L. Mendenhall, Jens Meiler, Daniel Cremers:
3D Deep Learning for Biological Function Prediction from Physical Fields. 3DV 2020: 928-937 - [c11]Yunchao Liu, Rocco Moretti, Bobby Bodenheimer, Jens Meiler:
Foldit Drug Design Game Usability Study: Comparison of Citizen and Expert Scientists. MIG 2020: 20:1-20:19 - [i2]Vladimir Golkov, Alexander Becker, Daniel T. Plop, Daniel Cuturilo, Neda Davoudi, Jeffrey L. Mendenhall, Rocco Moretti, Jens Meiler, Daniel Cremers:
Deep Learning for Virtual Screening: Five Reasons to Use ROC Cost Functions. CoRR abs/2007.07029 (2020)
2010 – 2019
- 2019
- [j21]Alexander M. Sevy, Cinque S. Soto, Robin G. Bombardi, Jens Meiler, James E. Crowe Jr.:
Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures. BMC Bioinform. 20(1): 629 (2019) - [j20]Oanh Vu, Jeffrey L. Mendenhall, Doaa Altarawy, Jens Meiler:
BCL: : Mol2D - a robust atom environment descriptor for QSAR modeling and lead optimization. J. Comput. Aided Mol. Des. 33(5): 477-486 (2019) - [j19]Benjamin P. Brown, Jeffrey L. Mendenhall, Jens Meiler:
BCL: : MolAlign: Three-Dimensional Small Molecule Alignment for Pharmacophore Mapping. J. Chem. Inf. Model. 59(2): 689-701 (2019) - 2018
- [j18]R. Michael Sivley, Jonathan H. Sheehan, Jonathan A. Kropski, Joy D. Cogan, Timothy S. Blackwell, John A. Phillips, William S. Bush, Jens Meiler, John A. Capra:
Three-dimensional spatial analysis of missense variants in RTEL1 identifies pathogenic variants in patients with Familial Interstitial Pneumonia. BMC Bioinform. 19(1): 18:1-18:10 (2018) - [j17]Darwin Y. Fu, Jens Meiler:
Predictive Power of Different Types of Experimental Restraints in Small Molecule Docking: A Review. J. Chem. Inf. Model. 58(2): 225-233 (2018) - [j16]Steven A. Combs, Benjamin K. Mueller, Jens Meiler:
Holistic Approach to Partial Covalent Interactions in Protein Structure Prediction and Design with Rosetta. J. Chem. Inf. Model. 58(5): 1021-1036 (2018) - [j15]Alexander M. Sevy, Swetasudha Panda, James E. Crowe Jr., Jens Meiler, Yevgeniy Vorobeychik:
Integrating linear optimization with structural modeling to increase HIV neutralization breadth. PLoS Comput. Biol. 14(2) (2018) - 2017
- [j14]Francois Berenger, Oanh Vu, Jens Meiler:
Consensus queries in ligand-based virtual screening experiments. J. Cheminformatics 9(1): 60:1-60:13 (2017) - [i1]Vladimir Golkov, Marcin J. Skwark, Atanas Mirchev, Georgi Dikov, Alexander R. Geanes, Jeffrey L. Mendenhall, Jens Meiler, Daniel Cremers:
3D Deep Learning for Biological Function Prediction from Physical Fields. CoRR abs/1704.04039 (2017) - 2016
- [j13]Jeffrey L. Mendenhall, Jens Meiler:
Improving quantitative structure-activity relationship models using Artificial Neural Networks trained with dropout. J. Comput. Aided Mol. Des. 30(2): 177-189 (2016) - [j12]Gregory Sliwoski, Jeffrey L. Mendenhall, Jens Meiler:
Autocorrelation descriptor improvements for QSAR: 2DA_Sign and 3DA_Sign. J. Comput. Aided Mol. Des. 30(3): 209-217 (2016) - [j11]Bian Li, Jeffrey L. Mendenhall, Elizabeth Dong Nguyen, Brian E. Weiner, Axel W. Fischer, Jens Meiler:
Accurate Prediction of Contact Numbers for Multi-Spanning Helical Membrane Proteins. J. Chem. Inf. Model. 56(2): 423-434 (2016) - [c10]Vladimir Golkov, Marcin J. Skwark, Antonij Golkov, Alexey Dosovitskiy, Thomas Brox, Jens Meiler, Daniel Cremers:
Protein contact prediction from amino acid co-evolution using convolutional networks for graph-valued images. NIPS 2016: 4215-4223 - 2015
- [j10]Sandeepkumar Kothiwale, Jeffrey L. Mendenhall, Jens Meiler:
BCL: : Conf: small molecule conformational sampling using a knowledge based rotamer library. J. Cheminformatics 7: 47:1-47:15 (2015) - [j9]Alexander M. Sevy, Tim M. Jacobs, James E. Crowe Jr., Jens Meiler:
Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences. PLoS Comput. Biol. 11(7) (2015) - 2013
- [j8]Steffen Lindert, Phoebe L. Stewart, Jens Meiler:
Computational determination of the orientation of a heat repeat-like domain of DNA-PKcs. Comput. Biol. Chem. 42: 1-4 (2013) - [j7]Joseph J. Crivelli, Gordon Lemmon, Kristian Kaufmann, Jens Meiler:
Simultaneous prediction of binding free energy and specificity for PDZ domain-peptide interactions. J. Comput. Aided Mol. Des. 27(12): 1051-1065 (2013) - [j6]Jordan R. Willis, Bryan S. Briney, Samuel L. DeLuca, James E. Crowe Jr., Jens Meiler:
Human Germline Antibody Gene Segments Encode Polyspecific Antibodies. PLoS Comput. Biol. 9(4) (2013) - 2012
- [c9]Edward W. Lowe, Mariusz Butkiewicz, Nils Woetzel, Jens Meiler:
GPU-accelerated machine learning techniques enable QSAR modeling of large HTS data. CIBCB 2012: 314-320 - [c8]Mariusz Butkiewicz, Edward W. Lowe, Jens Meiler:
Bcl∷ChemInfo - Qualitative analysis of machine learning models for activation of HSD involved in Alzheimer's Disease. CIBCB 2012: 329-334 - 2011
- [c7]Edward W. Lowe, Mariusz Butkiewicz, Matthew Spellings, Albert Omlor, Jens Meiler:
Comparative analysis of machine learning techniques for the prediction of logP. CIBCB 2011: 35-40 - [c6]Nathan Alexander, Nils Woetzel, Jens Meiler:
Bcl: : Cluster: A method for clustering biological molecules coupled with visualization in the Pymol Molecular Graphics System. ICCABS 2011: 13-18 - [c5]Edward W. Lowe, Nils Woetzel, Jens Meiler:
Poster: GPU-accelerated artificial neural network for QSAR modeling. ICCABS 2011: 254 - [c4]Edward W. Lowe, Nils Woetzel, Jens Meiler:
Poster: GPU-accelerated rigid body fitting of atomic structures into electron density maps. ICCABS 2011: 265 - 2010
- [j5]Mert Karakas, Nils Woetzel, Jens Meiler:
BCL: : Contact-Low Confidence Fold Recognition Hits Boost Protein Contact Prediction and De Novo Structure Determination. J. Comput. Biol. 17(2): 153-168 (2010)
2000 – 2009
- 2009
- [j4]Gregory D. Friedland, Nils-Alexander Lakomek, Christian Griesinger, Jens Meiler, Tanja Kortemme:
A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family. PLoS Comput. Biol. 5(5) (2009) - [c3]Julia Koehler, Ralf Mueller, Jens Meiler:
Improved prediction of trans-membrane spans in proteins using an artificial neural network. CIBCB 2009: 68-74 - [c2]Mariusz Butkiewicz, Ralf Mueller, Danilo Selic, Eric Dawson, Jens Meiler:
Application of machine learning approaches on quantitative structure activity relationships. CIBCB 2009: 255-262 - 2008
- [c1]Kristian Kaufmann, Jens Meiler:
Small Molecules as Rotamers: Generation and Docking in RosettaLigand. German Conference on Bioinformatics 2008: 148-157 - 2002
- [j3]Jens Meiler, Erdogan Sanli, Jochen Junker, Reinhard Meusinger, Thomas Lindel, Martin Will, Walter Maier, Matthias Köck:
Validation of Structural Proposals by Substructure Analysis and 13C NMR Chemical Shift Prediction. J. Chem. Inf. Comput. Sci. 42(2): 241-248 (2002) - 2001
- [j2]Jens Meiler, Martin Will:
Automated Structure Elucidation of Organic Molecules from 13C NMR Spectra Using Genetic Algorithms and Neural Networks. J. Chem. Inf. Comput. Sci. 41(6): 1535-1546 (2001) - 2000
- [j1]Jens Meiler, Reinhard Meusinger, Martin Will:
Fast Determination of 13C NMR Chemical Shifts Using Artificial Neural Networks. J. Chem. Inf. Comput. Sci. 40(5): 1169-1176 (2000)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2025-01-21 00:01 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
