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GastroVision: A Multi-class Endoscopy Image Dataset for Computer Aided Gastrointestinal Disease Detection

Published: 26 November 2023 Publication History

Abstract

Integrating real-time artificial intelligence (AI) systems in clinical practices faces challenges such as scalability and acceptance. These challenges include data availability, biased outcomes, data quality, lack of transparency, and underperformance on unseen datasets from different distributions. The scarcity of large-scale, precisely labeled, and diverse datasets are the major challenge for clinical integration. This scarcity is also due to the legal restrictions and extensive manual efforts required for accurate annotations from clinicians. To address these challenges, we present GastroVision, a multi-center open-access gastrointestinal (GI) endoscopy dataset that includes different anatomical landmarks, pathological abnormalities, polyp removal cases and normal findings (a total of 27 classes) from the GI tract. The dataset comprises 8,000 images acquired from Bærum Hospital in Norway and Karolinska University Hospital in Sweden and was annotated and verified by experienced GI endoscopists. Furthermore, we validate the significance of our dataset with extensive benchmarking based on the popular deep learning based baseline models. We believe our dataset can facilitate the development of AI-based algorithms for GI disease detection and classification. Our dataset is available at https://osf.io/84e7f/.

References

[1]
Abadir AP, Ali MF, Karnes W, and Samarasena JB Artificial intelligence in gastrointestinal endoscopy Clin. Endosc. 2020 53 2 132-141
[2]
Ahn SB, Han DS, Bae JH, Byun TJ, Kim JP, and Eun CS The miss rate for colorectal adenoma determined by quality-adjusted, back-to-back colonoscopies Gut Liver 2012 6 1 64
[3]
Ali S et al. Deep learning for detection and segmentation of artefact and disease instances in gastrointestinal endoscopy Med. Image Anal. 2021 70
[4]
Ali, S., et al.: Endoscopy disease detection challenge 2020. arXiv preprint arXiv:2003.03376 (2020)
[5]
Ali S et al. A multi-centre polyp detection and segmentation dataset for generalisability assessment Sci. Data 2023 10 1 75
[6]
Areia M et al. Cost-effectiveness of artificial intelligence for screening colonoscopy: a modelling study Lancet Digit. Health 2022 4 6 e436-e444
[7]
Arnold M et al. Global burden of 5 major types of gastrointestinal cancer Gastroenterology 2020 159 1 335-349
[8]
Bernal, J., Aymeric, H.: MICCAI endoscopic vision challenge polyp detection and segmentation (2017)
[9]
Bernal, J., Sánchez, F.J., Fernández-Esparrach, G., Gil, D., Rodríguez, C., Vilariño, F.: WM-DOVA maps for accurate polyp highlighting in colonoscopy: validation vs. saliency maps from physicians. Comput. Med. Imaging Graph. 43, 99–111 (2015)
[10]
Bernal J, Sánchez J, and Vilarino F Towards automatic polyp detection with a polyp appearance model Pattern Recogn. 2012 45 9 3166-3182
[11]
Borgli H et al. Hyperkvasir, a comprehensive multi-class image and video dataset for gastrointestinal endoscopy Sci. Data 2020 7 1 1-14
[12]
Crafa, P., Diaz-Cano, S.J.: Changes in colonic structure and mucosal inflammation. In: Colonic Diverticular Disease, pp. 41–61 (2022)
[14]
He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 770–778 (2016)
[15]
Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 4700–4708 (2017)
[16]
Jha D et al. Real-time polyp detection, localization and segmentation in colonoscopy using deep learning IEEE Access 2021 9 40496-40510
[17]
Jha, D., et al.: Kvasir-SEG: a segmented polyp dataset. In: Proceedings of the International Conference on Multimedia Modeling (MMM), pp. 451–462 (2020)
[18]
Koulaouzidis A et al. Kid project: an internet-based digital video atlas of capsule endoscopy for research purposes Endosc. Int. Open 2017 5 6 E477
[19]
Li, K., et al.: Colonoscopy polyp detection and classification: dataset creation and comparative evaluations. arXiv preprint arXiv:2104.10824 (2021)
[20]
Mahmud N, Cohen J, Tsourides K, and Berzin TM Computer vision and augmented reality in gastrointestinal endoscopy Gastroenterol. Rep. 2015 3 3 179-184
[21]
Misawa, M., et al.: Development of a computer-aided detection system for colonoscopy and a publicly accessible large colonoscopy video database (with video). Gastrointest. Endosc. 93(4), 960–967 (2021)
[22]
Pogorelov, K., et al.: Kvasir: a multi-class image dataset for computer aided gastrointestinal disease detection. In: Proceedings of the 8th ACM on Multimedia Systems Conference, pp. 164–169 (2017)
[23]
Silva J, Histace A, Romain O, Dray X, and Granado B Toward embedded detection of polyps in WCE images for early diagnosis of colorectal cancer Int. J. Comput. Assist. Radiol. Surg. 2014 9 2 283-293
[24]
Smedsrud PH et al. Kvasir-capsule, a video capsule endoscopy dataset Sci. Data 2021 8 1 1-10
[25]
Tajbakhsh N, Gurudu SR, and Liang J Automated polyp detection in colonoscopy videos using shape and context information IEEE Trans. Med. Imaging 2015 35 2 630-644
[26]
Tan, M., Le, Q.: Efficientnet: rethinking model scaling for convolutional neural networks. In: Proceedings of the International Conference on Machine Learning, pp. 6105–6114 (2019)
[27]
Thambawita, V., et al.: The medico-task 2018: disease detection in the gastrointestinal tract using global features and deep learning. In: Proceedings of the MediaEval 2018 Workshop (2018)

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              Published In

              cover image Guide Proceedings
              Machine Learning for Multimodal Healthcare Data: First International Workshop, ML4MHD 2023, Honolulu, Hawaii, USA, July 29, 2023, Proceedings
              Jul 2023
              199 pages
              ISBN:978-3-031-47678-5
              DOI:10.1007/978-3-031-47679-2
              • Editors:
              • Andreas K. Maier,
              • Julia A. Schnabel,
              • Pallavi Tiwari,
              • Oliver Stegle

              Publisher

              Springer-Verlag

              Berlin, Heidelberg

              Publication History

              Published: 26 November 2023

              Author Tags

              1. Medical image
              2. GastroVision
              3. Gastrointestinal diseases

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