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The multiple sequence alignment problem in biology

Authors:

Humberto Carrillo,

David LipmanAuthors Info & Claims

SIAM Journal on Applied Mathematics, Volume 48, Issue 5

Pages 1073 - 1082

https://doi.org/10.1137/0148063

Published: 01 October 1988 Publication History

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John O'Shea RWilkins L(2024)Vertex-substitution framework verifies the reconstruction conjecture for finite undirected graphsInformation Sciences: an International Journal10.1016/j.ins.2023.119858654:COnline publication date: 1-Jan-2024
https://dl.acm.org/doi/10.1016/j.ins.2023.119858
Rehman HZafar KKhan AImtiaz A(2021)Multiple sequence alignment using enhanced bird swarm align algorithmJournal of Intelligent & Fuzzy Systems: Applications in Engineering and Technology10.3233/JIFS-21005541:1(1097-1114)Online publication date: 1-Jan-2021
https://dl.acm.org/doi/10.3233/JIFS-210055
Hosseininasab Avan Hoeve W(2021)Exact Multiple Sequence Alignment by Synchronized Decision DiagramsINFORMS Journal on Computing10.1287/ijoc.2019.093733:2(721-738)Online publication date: 1-May-2021
https://dl.acm.org/doi/10.1287/ijoc.2019.0937
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The multiple sequence alignment problem in biology

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BCB '15: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics

The multiple sequence alignments computed by an aligner for different settings of its parameters, as well as the alignments computed by different aligners using their default settings, can differ markedly in accuracy. Parameter advising is the task of ...

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cover image SIAM Journal on Applied Mathematics

SIAM Journal on Applied Mathematics Volume 48, Issue 5

October 1988

242 pages

ISSN:0036-1399

Editor:
N. R. Lebovitz

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Society for Industrial and Applied Mathematics

United States

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Published: 01 October 1988

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John O'Shea RWilkins L(2024)Vertex-substitution framework verifies the reconstruction conjecture for finite undirected graphsInformation Sciences: an International Journal10.1016/j.ins.2023.119858654:COnline publication date: 1-Jan-2024
https://dl.acm.org/doi/10.1016/j.ins.2023.119858
Rehman HZafar KKhan AImtiaz A(2021)Multiple sequence alignment using enhanced bird swarm align algorithmJournal of Intelligent & Fuzzy Systems: Applications in Engineering and Technology10.3233/JIFS-21005541:1(1097-1114)Online publication date: 1-Jan-2021
https://dl.acm.org/doi/10.3233/JIFS-210055
Hosseininasab Avan Hoeve W(2021)Exact Multiple Sequence Alignment by Synchronized Decision DiagramsINFORMS Journal on Computing10.1287/ijoc.2019.093733:2(721-738)Online publication date: 1-May-2021
https://dl.acm.org/doi/10.1287/ijoc.2019.0937
Srinivasavaradhan SGopi SPfister HYekhanin S(2021)Trellis BMA: Coded Trace Reconstruction on IDS Channels for DNA Storage2021 IEEE International Symposium on Information Theory (ISIT)10.1109/ISIT45174.2021.9517821(2453-2458)Online publication date: 12-Jul-2021
https://dl.acm.org/doi/10.1109/ISIT45174.2021.9517821
Rocha RPetoumenos PWang ZCole MLeather HKandemir MJimborean AMoseley T(2019)Function merging by sequence alignmentProceedings of the 2019 IEEE/ACM International Symposium on Code Generation and Optimization10.5555/3314872.3314892(149-163)Online publication date: 16-Feb-2019
https://dl.acm.org/doi/10.5555/3314872.3314892
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Hatem MBurns ERuml W(2019)Solving large problems with heuristic searchJournal of Artificial Intelligence Research10.1613/jair.1.1120962:1(233-268)Online publication date: 17-Apr-2019
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Date PPatton RSchuman CPotok T(2019)Efficiently embedding QUBO problems on adiabatic quantum computersQuantum Information Processing10.1007/s11128-019-2236-318:4(1-31)Online publication date: 1-Apr-2019
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Waldl MWill SWolfinger MHofacker IStadler P(2019)Bi-alignments as Models of Incongruent Evolution of RNA Sequence and Secondary StructureComputational Intelligence Methods for Bioinformatics and Biostatistics10.1007/978-3-030-63061-4_15(159-170)Online publication date: 4-Sep-2019
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Optimal alignment of multiple sequence alignments

On multiple sequence alignment

Ensemble multiple sequence alignment via advising

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