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On the Approximability of Numerical Taxonomy (Fitting Distances by Tree Metrics)

Published: 21 February 1999 Publication History

Abstract

We consider the problem of fitting an n × n distance matrix D by a tree metric T . Let $\varepsilon$ be the distance to the closest tree metric under the $L_{\infty}$ norm; that is, $\varepsilon=\min_T\{\parallel T-D\parallel{\infty}\}$. First we present an O ( n 2) algorithm for finding a tree metric T such that $\parallel T-D\parallel{\infty}\leq 3\varepsilon$. Second we show that it is ${\cal NP}$-hard to find a tree metric T such that $\parallel T-D\parallel{\infty}<\frac{9}{8}\varepsilon$. This paper presents the first algorithm for this problem with a performance guarantee.

Cited By

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  • (2024)Fitting Distances by Tree Metrics Minimizing the Total Error within a Constant FactorJournal of the ACM10.1145/363945371:2(1-41)Online publication date: 10-Apr-2024
  • (2023)Fitting trees to ℓ1-hyperbolic distancesProceedings of the 37th International Conference on Neural Information Processing Systems10.5555/3666122.3666439(7263-7288)Online publication date: 10-Dec-2023
  • (2022)HyperAidProceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining10.1145/3534678.3539378(201-211)Online publication date: 14-Aug-2022
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Luigi Gatteschi

This paper is concerned with the so-called numerical taxonomy problem, that is, the problem of fitting an n × n distance matrix d by a tree metric T. Let e be the <__?__Pub Fmt nolinebreak>closest<__?__Pub Fmt /nolinebreak> additive metric under the L ? norm, that is, e = mi n T ? T - D ? ? . The authors present an O n 2 algorithm for finding an additive metric T , such that ? T - D ? ? ? 3 e . Furthermore, they complement the result by not only finding that an L - ? -optimal solution is <__?__Pub Fmt italic>NP<__?__Pub Fmt /italic>-hard, but also showing that it is <__?__Pub Fmt italic>NP<__?__Pub Fmt /italic>-hard to find an additive metric T such that ? T - D ? ? ? 3 8 e . The algorithm presented is achieved by transforming the general tree metric problem to that of ultrametrics, with a loss of a factor of 3 on the approximation ratio. Since the ultrametric problem is optimally solvable, the result follows. A generalization to other norms L k with finite k <__?__Pub Caret>concludes this interesting and well-written paper. It will be fully appreciated by researchers in the area of data structures and their applications.

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Society for Industrial and Applied Mathematics

United States

Publication History

Published: 21 February 1999

Author Tags

  1. approximation algorithm
  2. taxonomy
  3. tree metric

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Cited By

View all
  • (2024)Fitting Distances by Tree Metrics Minimizing the Total Error within a Constant FactorJournal of the ACM10.1145/363945371:2(1-41)Online publication date: 10-Apr-2024
  • (2023)Fitting trees to ℓ1-hyperbolic distancesProceedings of the 37th International Conference on Neural Information Processing Systems10.5555/3666122.3666439(7263-7288)Online publication date: 10-Dec-2023
  • (2022)HyperAidProceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining10.1145/3534678.3539378(201-211)Online publication date: 14-Aug-2022
  • (2020)On efficient low distortion ultrametric embeddingProceedings of the 37th International Conference on Machine Learning10.5555/3524938.3525132(2078-2088)Online publication date: 13-Jul-2020
  • (2019)Viewing the rings of a treeProceedings of the Thirtieth Annual ACM-SIAM Symposium on Discrete Algorithms10.5555/3310435.3310581(2380-2399)Online publication date: 6-Jan-2019
  • (2017)Metric embeddings with outliersProceedings of the Twenty-Eighth Annual ACM-SIAM Symposium on Discrete Algorithms10.5555/3039686.3039729(670-689)Online publication date: 16-Jan-2017
  • (2016)Improved error bounds for tree representations of metric spacesProceedings of the 30th International Conference on Neural Information Processing Systems10.5555/3157382.3157416(2846-2854)Online publication date: 5-Dec-2016
  • (2016)Metric tree-like structures in real-world networksNetworks10.1002/net.2163167:1(49-68)Online publication date: 1-Jan-2016
  • (2015)Improving skeletal shape abstraction using multiple optimal solutionsPattern Recognition10.1016/j.patcog.2015.05.01048:11(3504-3515)Online publication date: 1-Nov-2015
  • (2015)Finding the closest ultrametricDiscrete Applied Mathematics10.1016/j.dam.2014.07.023180:C(70-80)Online publication date: 10-Jan-2015
  • Show More Cited By

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