ProcessTron: efficient semi-automated markup generation for scientific documents
Pages 21 - 28
Abstract
Digitizing legacy documents and marking them up with XML is important for many scientific domains. However, creating comprehensive semantic markup of high quality is challenging. Respective processes consist of many steps, with automated markup generation and intermediate manual correction. These corrections are extremely laborious. To reduce this effort, this paper makes two contributions: First, it proposes ProcessTron, a lightweight markup-process-control mechanism. ProcessTron assists users in two ways: It ensures that the steps are executed in the appropriate order, and it points the user to possible errors during manual correction. Second, ProcessTron has been deployed in real-world projects, and this paper reports on our experiences. A core observation is that ProcessTron more than halves the time users need to mark up a document. Results from laboratory experiments, which we have conducted as well, confirm this finding.
References
[1]
Brazma, A. et al. Standards for systems biology. Nature Reviews Genetics 7, pp. 593--605, 2006.
[2]
Business Process Execution Language (BPEL) http://www.bpelsource.com/bpel_info/spec.html
[3]
Catapano, T. et al. TaxonX: A Lightweight and Flexible XML Schema for Mark-up of Taxonomic Treatments. In Proceedings of TDWG 2006, St. Louis, MO, USA, 2006.
[4]
J. Cohen, Statistical Power Analysis for the Behavioral Sciences, 2nd ed., Erlbaum, Hillsdale, NJ, USA, 1988, ISBN 0-8058-0283-5
[5]
Kim, J.-D. et al. GENIA corpus - a semantically annotated corpus for bio-text-mining. Bioinformatics, pp. i180--i182, Oxford University Press, 2003.
[6]
Kolawa, A.; Huizinga, D. Automated Defect Prevention: Best Practices in Software Management. Wiley-IEEE Computer Society Press, 2007
[7]
Marcus, M. P. et al. A. Building a Large Annotated Corpus of English: The Penn Treebank. Computational Linguistics, Vol. 19, No. 2, pp. 313--330, 1994.
[8]
Mikheev, A. et al. Named Entity Recognition without Gazetteers, in Proceedings of EACL, Bergen, Norway, 1999
[9]
Metadata Object Description Schema. http://www.loc.gov/standards/mods/
[10]
Sautter, G. et al. Empirical Evaluation of Semi-Automated XML Annotation of Text Documents with the GoldenGATE Editor. In Proceedings of European Conference on Research and Advances in Digital Libraries, Budapest, Hungary, 2007.
[11]
Sautter, G. et al. Creating Digital Resources from Legacy Documents - an Experience Report from the Biosystematics Domain, in Proceedings of ESWC, Heraklion, Greece, 2009
[12]
The Schematron Assertion Language http://xml.ascc.net/resource/schematron/Schematron2000.html
[13]
Van der Aalst, W. M. et al. Workflow Patterns, Distributed and Parallel Databases 14(1): pp. 5--51, 2003
[14]
Van der Aalst, W. M., van Hee, K. Workflow Management: Models, Methods, and Systems. The MIT Press, Cambridge, Massachusetts, 2004
[15]
XML Path Language. http://www.w3.org/TR/xpath
[16]
XML Schema http://www.w3.org/XML/Schema
Index Terms
- ProcessTron: efficient semi-automated markup generation for scientific documents
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Creating Digital Resources from Legacy Documents: An Experience Report from the Biosystematics Domain
ESWC 2009 Heraklion: Proceedings of the 6th European Semantic Web Conference on The Semantic Web: Research and ApplicationsDigitized legacy document marked up with XML can be used in many ways, e.g., to generate RDF statements about the world described. A prerequisite for doing so is that the document markup is of sufficient quality. Since fully automated markup-generation ...
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June 2010
424 pages
ISBN:9781450300858
DOI:10.1145/1816123
- General Chair:
- Jane Hunter,
- Program Chairs:
- Carl Lagoze,
- Lee Giles,
- Yuan-Fang Li
Copyright © 2010 ACM.
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Published: 21 June 2010
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