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The protégé project: a look back and a look forward

Published: 16 June 2015 Publication History
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    1. The protégé project: a look back and a look forward

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      cover image AI Matters
      AI Matters  Volume 1, Issue 4
      June 2015
      38 pages
      EISSN:2372-3483
      DOI:10.1145/2757001
      Issue’s Table of Contents

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      Association for Computing Machinery

      New York, NY, United States

      Publication History

      Published: 16 June 2015
      Published in SIGAI-AIMATTERS Volume 1, Issue 4

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