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Influence of the Null-Model on Motif Detection

Published: 25 August 2015 Publication History

Abstract

This paper focuses on the suitability of three different null-models to motif analysis that all get as an input a desired degree sequence. A graph theoretic null-model is defined as a set of graphs together with a probability function. Here we discuss the configuration model, as the simplest model; a variant of the configuration model where multi-edges are deleted; and the set of all graphs with a given degree sequence (FDSM), that most scientists would recommend to use but that has the disadvantage of a high time-complexity to sample from it. Furthermore, we develop equations for the expected number of motifs in the FDSM, based on the degree sequence and the assumption of simple independence. We present the motif count for several real-world graphs and compare them with the sampled average number of these motif counts in the different null-models. We check with a Kolmogorov-Smirnow two-sample test whether the samples originated from the same distribution. It can then be shown that the motif counts in the configuration model do not coincide with those of the FDSM. The equations are a good enough approximation of the motif count in generated graphs based on a prescribed degree sequence.

References

[1]
Edward A Bender and E Rodney Canfield. The asymptotic number of labeled graphs with given degree sequences. Journal of Combinatorial Theory, Series A, 24(3):296--307, 1978.
[2]
Annabell Berger and Matthias Müller-Hannemann. Uniform sampling of digraphs with a fixed degree sequence. In Graph theoretic concepts in computer science, pages 220--231. Springer, 2010.
[3]
Béla Bollobás and Andrew Thomason. Random graphs of small order. North-Holland Mathematics Studies, 118:47--97, 1985.
[4]
Richard A Brualdi. Matrices of zeros and ones with fixed row and column sum vectors. Linear algebra and its applications, 33:159--231, 1980.
[5]
George W. Cobb and Yung-Pin Chen. An application of markov chain monte carlo to community ecology. The American Mathematical Monthly, 110(4):265--288, 2003.
[6]
Colin Cooper, Martin Dyer, and Catherine Greenhill. Sampling regular graphs and a peer-to-peer network. Combinatorics, Probability and Computing, 16(04):557--593, 2007.
[7]
Jacob G. Foster, David V. Foster, Peter Grassberger, and Maya Paczuski. Edge direction and the structure of networks. Proceedings of the National Academy of Sciences, 107(24):10815--10820, 2010.
[8]
Catherine Greenhill. A polynomial bound on the mixing time of a markov chain for sampling regular directed graphs. the electronic journal of combinatorics, 18(1):P234, 2011.
[9]
Svante Janson. The probability that a random multigraph is simple. Combinatorics, Probability and Computing, 18(1-2):205--225, 2009.
[10]
Svante Janson. The probability that a random multigraph is simple, ii, July 2013.
[11]
Ravi Kannan, Prasad Tetali, and Santosh Vempala. Simple markov-chain algorithms for generating bipartite graphs and tournaments. In Proceedings of the eighth annual ACM-SIAM symposium on Discrete algorithms, pages 193--200. Society for Industrial and Applied Mathematics, 1997.
[12]
Nadav Kashtan, Shalev Itzkovitz, Ron Milo, and Uri Alon. Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs. Bioinformatics, 20(11):1746--1758, 2004.
[13]
Travis Martin, Xiao Zhang, and M. E. J. Newman. Localization and centrality in networks. Phys. Rev. E, 90:052808, Nov 2014.
[14]
Ron Milo, Shalev Itzkovitz, Nadav Kashtan, Reuven Levitt, Shai Shen-Orr, Inbal Ayzenshtat, Michal Sheffer, and Uri Alon. Superfamilies of evolved and designed networks. Science, 303(5663):1538--1542, 2004.
[15]
Ron Milo, Nadav Kashtan, Shalev Itzkovitz, Mark E. J. Newman, and Uri Alon. On the uniform generation of random graphs with prescribed degree sequences. arXiv preprint cond-mat/0312028, 2003.
[16]
Mark Newman. Networks: an introduction. Oxford University Press, 2010.
[17]
Alan Roberts and Lewis Stone. Island-sharing by archipelago species. Oecologia, 83(4):560--567, 1990.
[18]
Remco Van Der Hofstad. Random graphs and complex networks. Available on http://www.win.tue.nl/rhofstad/NotesRGCN.pdf, 2009.
[19]
Fabien Viger and Matthieu Latapy. Efficient and simple generation of random simple connected graphs with prescribed degree sequence. In Computing and Combinatorics, pages 440--449. Springer, 2005.
[20]
Jingbo Wang, Wai Wan Tsang, and George Marsaglia. Evaluating kolmogorov's distribution. Journal of Statistical Software, 8(18), 2003.
[21]
Nicholas C. Wormald and University of Newcastle (N.S.W.). Dept. of Electrical Engineering. Some Problems in the Enumeration of Labelled Graphs. University of Newcastle, 1978.

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cover image ACM Conferences
ASONAM '15: Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining 2015
August 2015
835 pages
ISBN:9781450338547
DOI:10.1145/2808797
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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Published: 25 August 2015

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  • (2024)Higher-Order Null Models as a Lens for Social SystemsPhysical Review X10.1103/PhysRevX.14.03103214:3Online publication date: 20-Aug-2024
  • (2023)Parallel global edge switching for the uniform sampling of simple graphs with prescribed degreesJournal of Parallel and Distributed Computing10.1016/j.jpdc.2022.12.010174:C(118-129)Online publication date: 1-Apr-2023
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  • (2022)Parallel Global Edge Switching for the Uniform Sampling of Simple Graphs with Prescribed Degrees2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS)10.1109/IPDPS53621.2022.00034(269-279)Online publication date: May-2022
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