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- research-articleSeptember 2014
Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison
BCB '14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health InformaticsPages 797–804https://doi.org/10.1145/2649387.2660851While efforts have been made to both retrieve genes associated with a phenotype, and model gene regulatory networks (GRNs), no such progress has been made regarding the creation of GRNs from phenotype keywords and reverse engineered large-scale gene ...
- research-articleSeptember 2014
Automatic biosystems comparison using semantic and name similarity
BCB '14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health InformaticsPages 790–796https://doi.org/10.1145/2649387.2660850With the growth of bio-systems model development, automatic approaches are needed to support systems biologists in model similarity evaluation. Several algorithms have been proposed, but they lack efficiency. We have developed an efficient, intuitive ...
- research-articleSeptember 2014
Heuristic parallelizable algorithm for similarity based biosystems comparison
BCB '14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health InformaticsPages 782–789https://doi.org/10.1145/2649387.2660849Biosystem comparison plays a major role in system biology. Similar biosystems are identified based on the similarity of species naming. Since the species naming does not follow a standard nomenclature, similarity is not easy to formalize. A single ...
- posterSeptember 2014
Care coordination metrics of patients sharing among physicians: a social network analytic approach
- Ahmed F. Abdelzaher,
- Preetam Ghosh,
- Ahmad F. Al Musawi,
- David S. Jackson,
- John A. Palesis,
- Jonathan P. Deshazo
BCB '14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health InformaticsPages 635–636https://doi.org/10.1145/2649387.2660811Social network analytic approaches have been previously proposed to identifying key metrics of physician care coordination [1]. Optimizing care coordination among physicians is a primary national concern for which yields significant cuts in medical care ...
- research-articleSeptember 2014
icuARM-II: improving the reliability of personalized risk prediction in pediatric intensive care units
BCB '14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health InformaticsPages 211–219https://doi.org/10.1145/2649387.2649440Clinicians in intensive care units (ICUs) rely on standardized scores as risk prediction models to predict a patient's vulnerability to life-threatening events. Current scales calculate scores from a fixed set of conditions collected within a specific ...
- research-articleSeptember 2014
Joint inference for end-to-end coreference resolution for clinical notes
BCB '14: Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health InformaticsPages 192–201https://doi.org/10.1145/2649387.2649437Recent US government initiatives have led to wide adoption of Electronic Health Records (EHRs). More and more health care institutions are storing patients' data in an electronic format. These EHRs contain valuable information which can be used in ...