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Extraction of contextual information from medical case research report using WordNet

Published: 25 March 2011 Publication History

Abstract

Relevant information within a document are usually embedded within a few sentences or passages (units). If any semantic tagging can be associated at the unit level within a document, the understanding of the information will be deeper and quicker saving a lot of effort and time of the user. In this paper we propose a simple approach of sentence tagging using the relational semantic network among lexical units as presented in WordNet. The approach is to propose a domain specific sub-taxonomy of key concepts following WordNet structure and associate a meaning with each of the sentences contextually. This approach also identifies those words from the text that can provide important semantic information in a tag assignation task. The occurrence of keywords will determinate a series of patterns that can be converted into rules for deciding the tagging and also information extraction as a useful application.

References

[1]
O. Bodenreider and A. Burgun. Biomedical ontologies. In Medical Informatics: Advances in Knowledge Management and Data Mining in Biomedicine. Springer-Verlag, 2005.
[2]
J. P. Callan. Passage-level evidence in document retrieval. In W. B. Croft and C. J. van Rijsbergen, editors, SIGIR, pages 302-310. ACM/Springer, 1994.
[3]
C. L. A. Clarke and E. L. Terra. Passage retrieval vs. document retrieval for factoid question answering. In Proceedings of the 26th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, pages 427--428. ACM, 2003.
[4]
T. Cohen and D. Widdows. Empirical distributional semantics: Methods and biomedical applications. Journal of Biomedical Informatics, 42(2):390--405, 2009.
[5]
A. Corrada-Emmanuel and W. B. Croft. Answer models for question answering passage retrieval. In Proceedings of the 27th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, pages 516--517. ACM, 2004.
[6]
C. Fellbaum. WordNet: An Electronic Lexical Database. MIT Press, Cambridge, MA, 1998.
[7]
M. A. Greenwood and M. Stevenson. Improving semi-supervised acquisition of relation extraction patterns. In Proceedings of the Workshop on Information Extraction Beyond The Document, IEBeyondDoc '06, pages 29--35, Morristown, NJ, USA, 2006.
[8]
M. A. Hearst. Texttiling: Segmenting text into multi-paragraph subtopic passages. Computational Linguistics, 23(1):33--64, March 1997.
[9]
J. Jiang and C. Zhai. Extraction of coherent relevant passages using hidden markov models. ACM Trans. Inf. Syst., 24(3):295--319, 2006.
[10]
J. L. Jorge Morato, Miguel Angel Marzal and J. Moreiro. Wordnet applications. In Proceedings of the The Second Global Wordnet Conference Brno, Czech Republic, 2004.
[11]
M. Kaszkiel and J. Zobel. Passage retrieval revisited. In Proceedings of the 20thAnnual International ACM SIGIR Conference on Research and Development in Information Retrieval, pages 178--185, 1997.
[12]
C. Leacock and M. Chodorow. Combining local context and wordnet similarity for word sense identification. In C. Fellfaum, MIT Press, pages 265--283, Cambridge, 1998.
[13]
X. Liu and W. B. Croft. Passage retrieval based on language models. In CIKM, pages 375--382. ACM, 2002.
[14]
R. Mihalcea. Turning wordnet into an information retrieval resource: Systematic polysemy and conversion to hierarchical codes. IJPRAI, 17(5):689--704, 2003.
[15]
G. A. Miller. Wordnet: A lexical database for English. Communications of the ACM, 38(1):39--41, 1995.
[16]
D. I. Moldovan and R. Mihalcea. Using wordnet and lexical operators to improve internet searches. IEEE Internet Computing, 4(1):34--43, 2000.
[17]
T. Pedersen, S. V. S. Pakhomov, Siddharth, and C. G. Chute. Measures of semantic similarity and relatedness in the biomedical domain. Journal of Biomedical Informatics, 40(3):288--299, 2007.
[18]
A. L. L. Phyu and N. Thein. Domain adaptive information extraction using link grammar and wordnet. In C5, pages 47--53. IEEE Computer Society, 2007.
[19]
P. Resnik. Semantic similarity in a taxonomy: An information-based measure and its application to problems of ambiguity in natural language. Journal of Artificial Intelligence Research, 11(1):95--130, 1999.
[20]
R. Richardson and A. M. Smeaton. Using wordnet in a knowledge based approach to information retrieval. Working paper, School of Computer Applications, Dublin City University, 1995.
[21]
T. T. Rila Mandala and T. Hozumi. The use of wordnet for information retrieval. Proceedings of Use of WordNet in Natural Language Processing Systems, pages 31--37, 1998.
[22]
G. Salton, J. Allan, and C. Buckley. Approaches to passage retrieval in full text information systems. In ACM SIGIR conference on R&D in Information Retrieval, pages 49--58, 1993.
[23]
A. Sebti and A. A. Barfroush. A new word sense similarity measure in wordnet. In Proceedings of the International Multiconference on Computer Science and Information Technology, pages 369--373, 2008.
[24]
A. Sharan and M. L. Joshi. An insight into semantic similarity aspects using wordnet. IJICT, 2(4):331--341, 2010.
[25]
B. Smith and C. Fellbaum. Medical wordnet: A new methodology for the construction and validation of information resources for consumer health. In Proceedings of Coling, The 20th International Conference on Computational Linguistics, pages 371--382, Geneva, 2004.
[26]
M. Stevenson, and M. A. Greenwood. Learning information extraction patterns using wordnet. In Proceedings of the 5th Intl. Conf. on Language Resources and Evaluations, 22--28 May 2006, pages 95--102, 2006.
[27]
F. Suchanek, G. Kasneci, and G. Weikum. YAGO: A core of semantic knowledge - unifying WordNet and Wikipedia. In 16th International World Wide Web Conference (WWW 2007), pages 697--706, Banfi, Canada, 2007. ACM.
[28]
S. Tellex, B. Katz, J. Lin, A. Fern, and G. Marton. Quantitative evaluation of passage retrieval algorithms for question answering. In Proceedings of the 26th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR), pages 41--47, 2003.
[29]
X. Zhou, H. Han, I. Chankai, A. Prestrud, and A. D. Brooks. Approaches to text mining for clinical medical records. In H. Haddad, editor, SAC, pages 235--239. ACM, 2006.

Cited By

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  • (2014)Crowd explicit sentiment analysisKnowledge-Based Systems10.1016/j.knosys.2014.05.00769:1(134-139)Online publication date: 1-Oct-2014
  • (2013)Spanish knowledge base generation for polarity classification from massesProceedings of the 22nd International Conference on World Wide Web10.1145/2487788.2487996(571-578)Online publication date: 13-May-2013

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cover image ACM Other conferences
COMPUTE '11: Proceedings of the Fourth Annual ACM Bangalore Conference
March 2011
194 pages
ISBN:9781450307505
DOI:10.1145/1980422
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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Publication History

Published: 25 March 2011

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Author Tags

  1. WordNet
  2. biomedical domain
  3. context
  4. information extraction
  5. information retrieval
  6. tagging

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Cited By

View all
  • (2014)Crowd explicit sentiment analysisKnowledge-Based Systems10.1016/j.knosys.2014.05.00769:1(134-139)Online publication date: 1-Oct-2014
  • (2013)Spanish knowledge base generation for polarity classification from massesProceedings of the 22nd International Conference on World Wide Web10.1145/2487788.2487996(571-578)Online publication date: 13-May-2013

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