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Finding similar regions in many strings

Authors:

Ming Li,

Bin Ma,

Lusheng WangAuthors Info & Claims

STOC '99: Proceedings of the thirty-first annual ACM symposium on Theory of Computing

Pages 473 - 482

https://doi.org/10.1145/301250.301376

Published: 01 May 1999 Publication History

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Romero RMenichelli CVroland CMarin JLèbre SLecellier CBréhélin L(2024)TFscope: systematic analysis of the sequence features involved in the binding preferences of transcription factorsGenome Biology10.1186/s13059-024-03321-825:1Online publication date: 10-Jul-2024
https://doi.org/10.1186/s13059-024-03321-8
Tognon MGiugno RPinello L(2023)A survey on algorithms to characterize transcription factor binding sitesBriefings in Bioinformatics10.1093/bib/bbad156Online publication date: 25-Apr-2023
https://doi.org/10.1093/bib/bbad156
Garbelini JSanches DPozo A(2022)Expectation Maximization based algorithm applied to DNA sequence motif finder2022 IEEE Congress on Evolutionary Computation (CEC)10.1109/CEC55065.2022.9870303(1-8)Online publication date: 18-Jul-2022
https://dl.acm.org/doi/10.1109/CEC55065.2022.9870303
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Finding similar regions in many strings

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STOC '99: Proceedings of the thirty-first annual ACM symposium on Theory of Computing

May 1999

790 pages

ISBN:1581130678

DOI:10.1145/301250

Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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Published: 01 May 1999

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STOC99: ACM Symposium on Theory of Computing

May 1 - 4, 1999

Georgia, Atlanta, USA

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Romero RMenichelli CVroland CMarin JLèbre SLecellier CBréhélin L(2024)TFscope: systematic analysis of the sequence features involved in the binding preferences of transcription factorsGenome Biology10.1186/s13059-024-03321-825:1Online publication date: 10-Jul-2024
https://doi.org/10.1186/s13059-024-03321-8
Tognon MGiugno RPinello L(2023)A survey on algorithms to characterize transcription factor binding sitesBriefings in Bioinformatics10.1093/bib/bbad156Online publication date: 25-Apr-2023
https://doi.org/10.1093/bib/bbad156
Garbelini JSanches DPozo A(2022)Expectation Maximization based algorithm applied to DNA sequence motif finder2022 IEEE Congress on Evolutionary Computation (CEC)10.1109/CEC55065.2022.9870303(1-8)Online publication date: 18-Jul-2022
https://dl.acm.org/doi/10.1109/CEC55065.2022.9870303
Xu SPerkins D(2022)A Heuristic Solution to the Closest String Problem Using Wave Function Collapse TechniquesIEEE Access10.1109/ACCESS.2022.321800310(115869-115883)Online publication date: 2022
https://doi.org/10.1109/ACCESS.2022.3218003
Garbelini JSanches DPozo A(2022)Towards a Better Understanding of Heuristic Approaches Applied to the Biological Motif DiscoveryIntelligent Systems10.1007/978-3-031-21686-2_13(180-194)Online publication date: 19-Nov-2022
https://doi.org/10.1007/978-3-031-21686-2_13
Prosperi MMarini SBoucher C(2021)Fast and exact quantification of motif occurrences in biological sequencesBMC Bioinformatics10.1186/s12859-021-04355-622:1Online publication date: 18-Sep-2021
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Kaysar MIbrahim Khan M(2019)Chapman-Kolmogorov Relation Based Median String Algorithm for DNA Consensus Classification2019 1st International Conference on Advances in Science, Engineering and Robotics Technology (ICASERT)10.1109/ICASERT.2019.8934582(1-6)Online publication date: May-2019
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Caldonazzo Garbelini JKashiwabara ASanches D(2018)Sequence motif finder using memetic algorithmBMC Bioinformatics10.1186/s12859-017-2005-119:1Online publication date: 3-Jan-2018
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Blum CFesta P(2018)Selected String ProblemsHandbook of Heuristics10.1007/978-3-319-07124-4_58(1221-1240)Online publication date: 14-Aug-2018
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Blum CFesta P(2017)Selected String ProblemsHandbook of Heuristics10.1007/978-3-319-07153-4_58-1(1-20)Online publication date: 22-Feb-2017
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