Cited By
View all- Alzamel MCharalampopoulos PIliopoulos CPissis SRadoszewski JSung W(2019)Faster algorithms for 1-mappability of a sequenceTheoretical Computer Science10.1016/j.tcs.2019.04.026Online publication date: May-2019
Faster Computation of Genome Mappability
Authors: 
Sahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. ThankachanAuthors Info & Claims
Sahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. ThankachanAuthors Info & ClaimsPage 537
Abstract
\beginthebibliography 1 \bibitemalzamel2017faster M. Alzamel, P. Charalampopoulos, C. S. Iliopoulos, S. P. Pissis, J. Radoszewski, and W.-K. Sung. \newblock Faster algorithms for 1-mappability of a sequence. \newblock In \em International Conference on Combinatorial Optimization and Applications, pages 109--121. Springer, 2017. \bibitemderrien2012fast T. Derrien, J. Estellé, S. M. Sola, D. G. Knowles, E. Raineri, R. Guigó, and P. Ribeca. \newblock Fast computation and applications of genome mappability. \newblock \em PloS one, 7(1):e30377, 2012. \bibitemThankachanACA18 S. V. Thankachan, C. Aluru, S. P. Chockalingam, and S. Aluru. \newblock Algorithmic framework for approximate matching under bounded edits with applications to sequence analysis. \newblock In \em Research in Computational Molecular Biology - 22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings, pages 211--224, 2018. \endthebibliography
References
[1]
M. Alzamel, P. Charalampopoulos, C. S. Iliopoulos, S. P. Pissis, J. Radoszewski, and W.-K. Sung. Faster algorithms for 1-mappability of a sequence. In Interna- tional Conference on Combinatorial Optimization and Applications, pages 109--121. Springer, 2017.
[2]
T. Derrien, J. Estellé, S. M. Sola, D. G. Knowles, E. Raineri, R. Guigó, and P. Ribeca. Fast computation and applications of genome mappability. PloS one, 7(1):e30377, 2012.
[3]
S. V. Thankachan, C. Aluru, S. P. Chockalingam, and S. Aluru. Algorithmic framework for approximate matching under bounded edits with applications to sequence analysis. In Research in Computational Molecular Biology - 22nd Annual erence, RECOMB 2018, Paris, France, April 21--24, 2018, Proceedings, 11--224, 2018.
Index Terms
- Faster Computation of Genome Mappability
Recommendations
Measuring the Mappability Spectrum of Reference Genome Assemblies
BCB '18: Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health InformaticsThe ability to infer actionable information from genomic variation data in a resequencing experiment relies on accurately aligning the sequences to a reference genome. However, this accuracy is inherently limited by the quality of the reference assembly ...
The Korea Brassica Genome Project: A glimpse of the Brassica genome based on comparative genome analysis with Arabidopsis: Conference Papers
A complete genome sequence provides unlimited information in the sequenced organism as well as in related taxa. According to the guidance of the Multinational Brassica Genome Project (MBGP), the Korea Brassica Genome Project (KBGP) is sequencing ...
Comments
Information & Contributors
Information
Published In
August 2018
727 pages
ISBN:9781450357944
DOI:10.1145/3233547
- General Chairs:
- Amarda Shehu,
- Cathy Wu,
- Program Chairs:
- Christina Boucher,
- Jing Li,
- Hongfang Liu,
- Mihai Pop
Copyright © 2018 Owner/Author.
Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.
Sponsors
Publisher
Association for Computing Machinery
New York, NY, United States
Publication History
Published: 15 August 2018
Check for updates
Author Tags
Qualifiers
- Poster
Conference
BCB '18
Sponsor:
BCB '18: 9th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics
August 29 - September 1, 2018
DC, Washington, USA
Acceptance Rates
BCB '18 Paper Acceptance Rate 46 of 148 submissions, 31%;
Overall Acceptance Rate 254 of 885 submissions, 29%
Upcoming Conference
Contributors
Other Metrics
Bibliometrics & Citations
Bibliometrics
Article Metrics
- View Citations1Total Citations
- 111Total Downloads
- Downloads (Last 12 months)1
- Downloads (Last 6 weeks)0
Reflects downloads up to 27 Jul 2024
Other Metrics
Citations
Cited By
View all- Alzamel MCharalampopoulos PIliopoulos CPissis SRadoszewski JSung W(2019)Faster algorithms for 1-mappability of a sequenceTheoretical Computer Science10.1016/j.tcs.2019.04.026Online publication date: May-2019
View Options
Get Access
Login options
Check if you have access through your login credentials or your institution to get full access on this article.
Sign in