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NDN-SCI for managing large scale genomics data

Published: 21 September 2018 Publication History

Abstract

Genomics datasets are currently managed by iRODS, the Integrated Rule-Oriented Data System, which is an open source data management software. iRODS provides several services, including indexing, publishing, integrity, storage, and provenance. In this work, we investigate how NDN can seamlessly integrate into iRODS to provide simplified and improved functionality such as name-based data discovery, replication, retrieval, and computation at the edge. We show how to integrate these NDN based mechanisms as well as caching into iRODs. Once completely functional, we aim to study NDN's benefits in a live, production system with real users.

References

[1]
Fan, C., Shannigrahi, S., DiBenedetto, S., Olschanowsky, C., Papadopoulos, C., and Newman, H. Managing scientific data with named data networking. In Proceedings of the Fifth International Workshop on Network-Aware Data Management (2015), ACM, p. 1.
[2]
Rajasekar, A., Moore, R., Hou, C.-Y., Lee, C. A., Marciano, R., DE Torcy, A., Wan, M., Schroeder, W., Chen, S.-Y., Gilbert, L., ET AL. irods primer: integrated rule-oriented data system. Synthesis Lectures on Information Concepts, Retrieval, and Services 2, 1 (2010), 1--143.

Cited By

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  • (2022)N-DISEProceedings of the 9th ACM Conference on Information-Centric Networking10.1145/3517212.3558087(103-113)Online publication date: 6-Sep-2022
  • (2021)Named Data Networking for Genomics Data Management and Integrated WorkflowsFrontiers in Big Data10.3389/fdata.2021.5824684Online publication date: 15-Feb-2021
  • (2019)Compound Popular Content Caching Strategy in Named Data NetworkingElectronics10.3390/electronics80707718:7(771)Online publication date: 10-Jul-2019

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cover image ACM Conferences
ICN '18: Proceedings of the 5th ACM Conference on Information-Centric Networking
September 2018
230 pages
ISBN:9781450359597
DOI:10.1145/3267955
Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

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Association for Computing Machinery

New York, NY, United States

Publication History

Published: 21 September 2018

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Author Tags

  1. NDN
  2. information centric networking
  3. named data networking
  4. scientific data

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ICN '18
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ICN '18: 5th ACM Conference on Information-Centric Networking
September 21 - 23, 2018
Massachusetts, Boston

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ICN '18 Paper Acceptance Rate 17 of 57 submissions, 30%;
Overall Acceptance Rate 133 of 482 submissions, 28%

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Cited By

View all
  • (2022)N-DISEProceedings of the 9th ACM Conference on Information-Centric Networking10.1145/3517212.3558087(103-113)Online publication date: 6-Sep-2022
  • (2021)Named Data Networking for Genomics Data Management and Integrated WorkflowsFrontiers in Big Data10.3389/fdata.2021.5824684Online publication date: 15-Feb-2021
  • (2019)Compound Popular Content Caching Strategy in Named Data NetworkingElectronics10.3390/electronics80707718:7(771)Online publication date: 10-Jul-2019

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