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Spatial Pyramid Dynamic Graph Convolution Assisted Two-Stage U-Net for Retinal Layer and Optic Disc Segmentation in OCT Images

Published: 25 February 2023 Publication History

Abstract

Retinal nerve fiber layer (RNFL) thickness in retinal optical coherence tomography (OCT) images is commonly used in the diagnosis of glaucoma. However, due to the presence of the optic disc, the retinal tissue surrounding the optic disc is difficult to segment. To solve this problem, this paper uses a two-stage U-Net as the inference framework, inserts a pyramid dynamic graph inference module in the two-stage U-Net framework, and performs coarse-to-fine graph feature inference between the encoder and the decoder. Finally, a two-stage segmentation model SpDGRU-Net is proposed to segment the retinal layer and optic disc respectively. This paper conducts experiments on the OCT public dataset, and the proposed SpDGRU-Net segmentation network achieves an average Dice score of 0.826 and an average pixel accuracy of 0.835, both of which outperform other state-of-the-art techniques.

References

[1]
P. Song, J. Wang, K. Bucan, E. Theodoratou, I. Rudan, and K. Y. Chan, “National and subnational prevalence and burden of glaucoma in china: a systematic analysis,” Bull. World Heal. Organ. 7(2), 020705 (2017).
[2]
A. V. Mantravadi and N. Vadhar, “Glaucoma,” Prim. Care 42(3), 437–449 (2015).
[3]
V. Kansal, J. J. Armstrong, R. Pintwala, and C. Hutnik, “Optical coherence tomography for glaucoma diagnosis: an evidence based meta-analysis,” IEEE Access(1), e0190621 (2018).
[4]
J. Long, E. Shelhamer, and T. Darrell, “Fully convolutional networks for semantic segmentation,” arXiv: 1411.4038 (2014).
[5]
O. Ronneberger, P. Fischer, and T. Brox, “U-net: Convolutional networks for biomedical image segmentation,” in Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, N. Navab, J. Hornegger, W. M. Wells, and A. F. Frangi, eds. (Springer International Publishing), pp. 234–241.
[6]
Z. Chai, K. Zhou, J. Yang, Y. Ma, Z. Chen, S. Gao, and J. Liu, “Perceptual-assisted adversarial adaptation for choroid segmentation in optical coherence tomography,” in 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), pp. 1966–1970.
[7]
S. K. Devalla, P. K. Renukanand, B. K. Sreedhar, G. Subramanian, L. Zhang, S. Perera, J. M. Mari, K. S. Chin, T. A. Tun, N. G. Strouthidis, T. Aung, A. H. Thiery, and M. J. A. Girard, “Drunet: a dilated-residual U-net deep learning network to segment optic nerve head tissues in optical coherence tomography images,” Biomed. Opt. Express 9(7), 3244–3265 (2018).
[8]
X. Xi, X. Meng, Z. Qin, X. Nie, Y. Yin, and X. Chen, “Ia-net: informative attention convolutional neural network for choroidal neovascularization segmentation in OCT images,” Biomed. Opt. Express 11(11), 6122 (2020).
[9]
X. Yang, X. Chen, and D. Xiang, “Attention-guided channel to pixel convolution network for retinal layer segmentation with choroidal neovascularization,” in Medical Imaging 2020: Image Processing, vol. 11313I. Išgum and B. A. Landman, eds., International Society for Optics and Photonics (SPIE, 2020), pp. 786–792.
[10]
P. Zang, J. Wang, T. T. Hormel, L. Liu, D. Huang, and Y. Jia, “Automated segmentation of peripapillary retinal boundaries in oct combining a convolutional neural network and a multi-weights graph search,” Biomed. Opt. Express 10(8), 4340–4352 (2019).
[11]
A. G. Roy, S. Conjeti, S. P. K. Karri, D. Sheet, A. Katouzian, C. Wachinger, and N. Navab, “Relaynet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks,” Biomed. Opt. Express 8(8), 3627 (2017).
[12]
X. Yang, X. Chen, and D. Xiang, “Attention-guided channel to pixel convolution network for retinal layer segmentation with choroidal neovascularization,” in Medical Imaging 2020: Image Processing, vol. 11313I. Išgum and B. A. Landman, eds., International Society for Optics and Photonics (SPIE, 2020), pp. 786–792.
[13]
P. Zang, J. Wang, T. T. Hormel, L. Liu, D. Huang, and Y. Jia, “Automated segmentation of peripapillary retinal boundaries in oct combining a convolutional neural network and a multi-weights graph search,” Biomed. Opt. Express 10(8), 4340–4352 (2019).
[14]
S. K. Devalla, P. K. Renukanand, B. K. Sreedhar, G. Subramanian, L. Zhang, S. Perera, J. M. Mari, K. S. Chin, T. A. Tun, N. G. Strouthidis, T. Aung, A. H. Thiery, and M. J. A. Girard, “Drunet: a dilated-residual U-net deep learning network to segment optic nerve head tissues in optical coherence tomography images,” Biomed. Opt. Express 9(7), 3244–3265 (2018).
[15]
Jiaxuan Li, Peiyao Jin, Jianfeng Zhu, Haidong Zou.“Multi-scale GCN-assisted two-stage network for joint segmentation of retinal layers and discs in peripapillary OCT images,”Biomedical Optics Express Vol. 12, Issue 4, pp. 2204-2220 (2021).

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  1. Spatial Pyramid Dynamic Graph Convolution Assisted Two-Stage U-Net for Retinal Layer and Optic Disc Segmentation in OCT Images

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    ICAIP '22: Proceedings of the 6th International Conference on Advances in Image Processing
    November 2022
    202 pages
    ISBN:9781450397155
    DOI:10.1145/3577117
    Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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    Published: 25 February 2023

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    Author Tags

    1. Deep Learning
    2. Graph Convolution
    3. Medical Images

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