Genomic-World Fungi Data: Synteny Part
Pages 1194 - 1195
Abstract
Fungal genomes undergo duplication events such as Whole Genome Duplication (WGD), which contribute to rapid adaptation and increased genetic diversity. The results provide insights into genome integrity, completeness, evolutionary patterns, and functional conservation observed across different fungal species. Highly conserved synteny patterns underscore the significance of cell membrane proteins, proteolytic capabilities, dynein motor proteins, and endocytosis processes in Basidiomycota, supporting the essential roles these processes play in their development throughout evolution. This research establishes the groundwork for further exploration of genomic diversity and potential applications of synteny analysis in elucidating evolutionary patterns and ecological relationships among fungal species.
References
[1]
Almeida-Silva, F., Zhao,T., Ullrich, K. K., Schranz, M. E., & Van de Peer, Y. (2023). syntenet: an R/Bioconductor packages.
[2]
Gamboa-Tuz, S. D., Pereira-Santana, A., Zhao, T., & Schranz, M. E. (2022). Applying Synteny Networks (SynNet) to Study Genomic Arrangements of Protein-Coding Genes in Plants. In Plant Comparative Genomics (pp. 199--215). New York, NY: Springer US.
[3]
Cantalapiedra, C. P., Hernández-Plaza, A., Letunic, I., Bork, P., & Huerta-Cepas, J. (2021). eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale. Molecular biology and evolution, 38(12), 5825--5829.
Index Terms
- Genomic-World Fungi Data: Synteny Part
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Published In
March 2024
1246 pages
ISBN:9798400703713
DOI:10.1145/3616855
- General Chairs:
- Luz Angélica,
- Silvio Lattanzi,
- Andrés Muñoz Medina,
- Program Chairs:
- Leman Akoglu,
- Aristides Gionis,
- Sergei Vassilvitskii
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Published: 04 March 2024
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WSDM '24: The 17th ACM International Conference on Web Search and Data Mining
March 4 - 8, 2024
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