New bound and constructions for geometric orthogonal codes and geometric 180-rotating orthogonal codes
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Abstract
Geometric orthogonal codes (GOCs) and geometric 180-rotating orthogonal codes (RGOCs) were introduced by Doty and Winslow for their application in DNA origami. So far, only a few classes of GOCs and one class of RGOCs are known. In this paper, we provide the combinatorial descriptions, present the upper bounds for the number of codewords and establish some recursive constructions for GOCs and RGOCs, respectively. As a consequence, the number of codewords in an optimal $ (n\times m, k, k-1) $-GOC and $ (n\times m, k, $ $ k-1) $-RGOC are determined for any positive integers $ n, m $ and $ k $. Some infinite families of $ (n\times m, k, \lambda) $-GOCs and $ (n\times m, k, \lambda) $-RGOCs for $ \lambda<k-1 $ are also obtained.
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Keywords:
- Geometric orthogonal code,
- geometric 180-rotating orthogonal code,
- DNA origami,
- geometrical difference packing,
- orbit.
Mathematics Subject Classification: Primary: 05B10, 05B40; Secondary: 94C30.Citation: -
Table 1. Some existential results of
-GOCs$ (n\times m, k, \lambda) $ Parameters Conditions Size Reference $ (n \times m, 3,1)$ $n\equiv0\pmod {3}, m\equiv3, 6\pmod {12}$
or $m\equiv0\pmod {3}, n\equiv3, 6\pmod {12}$
$(n\times m, 3, 1)$
or $m\equiv0\pmod {3}, n\equiv3, 6\pmod {12}$
or $m\equiv0\pmod {3}, n\equiv3, 6\pmod {12}$$\frac{2nm-n-m}{3}-1$ (optimal) [5,30] otherwise $\lfloor\frac{2nm-n-m}{3}\rfloor$ (optimal) $(n\times m, 3, 2)$ $\Phi(n\times m, 3, 2)$ (optimal) Theorem 3.5 $(n\times m, 4, 1)$ $n, m \equiv1\pmod {6}, n, m\leq6001$ and $n, m\neq13, 19$ $\frac{2nm-n-m}{6}$ (optimal) Lemma 4.7 $(n\times m, 4, 1)$ $n \equiv1\pmod {6}, n\leq6001, n\neq13, 19$ and $m\geq4, m\not\equiv2\pmod {4}$ $\frac{m(n-1)}{6}$ Corollary 4.19 $(2^x\times 2^y, 4, 2)$ $n\geq3$ and $n=x+y$ $2*J(2^{n}, 4, 2)$ Corollary 4.14 $(2^n\times m, 4, 2)$ $n\geq3$ $2m^2*J(2^n, 4, 2)$ Corollary 4.20 $(n\times m, 4, 3)$ $\Phi (n\times m, 4, 3)$ (optimal) Theorem 3.5 Table 2. Some existential results of
-RGOCs$ (n\times m, k, \lambda) $ Parameters Conditions Size Reference $(n\times m, 3, 2)$ $\Psi(n\times m, 3, 2)$ (optimal) Theorem 3.13 $(n\times m, 4, 2)$ $n \equiv1\pmod {6}, n\leq6001, n\neq13, 19$ $\frac{m^2(n-1)}{6}$ Corollary 4.23 $(n\times m, 4, 3)$ $\Psi(n\times m, 4, 3)$ (optimal) Theorem 3.13 -
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