BioSimGrid

BioSimGrid was a project to make data sets from computer simulations in the field of modelling biological systems, particularly biomolecular structures, more accessible to researchers. The project began in 2004 and halted by 2009.

In 2004 designers presented the concept of the project as a "protein data bank extended in time".^[1] Other developers presented a web portal for accessing data in the project.^[2] Other designers described the project as efficient.^[3]

A review in 2006 described how BioSimGrid was a model project for making data from research more open.^[4]

BioSimGrid contributors accepted a grant from the National Institutes of Health in 2007.^[5]

References

^ Tai, Kaihsu; Murdock, Stuart; Wu, Bing; Ng, Muan Hong; Johnston, Steven; Fangohr, Hans; Cox, Simon J.; Jeffreys, Paul; Essex, Jonathan W.; P. Sansom, Mark S. (2004). "BioSimGrid: towards a worldwide repository for biomolecular simulations". Organic & Biomolecular Chemistry. 2 (22): 3219–21. CiteSeerX 10.1.1.58.9886. doi:10.1039/b411352g. PMID 15534698.
^ Wu, B.; Dovey, M.; Ng, M.H.; Tai, K.; Murdock, S.; Jeffreys, P.; Cox, S.; Essex, J.; Sansom, M.S.P. (2004). "A Web/Grid portal implementation of BioSimGrid: A biomolecular simulation database". International Conference on Information Technology: Coding and Computing, 2004. Proceedings. ITCC 2004. Vol. 2. pp. 50–54. CiteSeerX 10.1.1.108.6976. doi:10.1109/ITCC.2004.1286589. ISBN 978-0-7695-2108-4. S2CID 5729099.
^ Ng, Muan Hong; Johnston, Steven; Murdock, Stuart; Wu, Bing; Tai, Kaihsu; Fangohr, Hans; Cox, Simon; Essex, Jonathan W.; Sansom, Mark; Jeffreys, Paul (2004). "Efficient data storage and analysis for generic biomolecular simulation data". pp. 443–450.
^ Ng, Muan Hong; Johnston, Steven; Wu, Bing; Murdock, Stuart E.; Tai, Kaihsu; Fangohr, Hans; Cox, Simon J.; Essex, Jonathan W.; Sansom, Mark S.P.; Jeffreys, Paul (May 2006). "BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis" (PDF). Future Generation Computer Systems. 22 (6): 657–664. doi:10.1016/j.future.2005.10.005.
^ Murdock, Stuart (2007). "Extending Biosimgrid for Biomol Simulation". Grantome.

External links

Official website
biosimgrid.org is now defunct and Archived 17 July 2009 at the Wayback Machine
file archive at SourceForge

[1] Tai, Kaihsu; Murdock, Stuart; Wu, Bing; Ng, Muan Hong; Johnston, Steven; Fangohr, Hans; Cox, Simon J.; Jeffreys, Paul; Essex, Jonathan W.; P. Sansom, Mark S. (2004). "BioSimGrid: towards a worldwide repository for biomolecular simulations". Organic & Biomolecular Chemistry. 2 (22): 3219–21. CiteSeerX 10.1.1.58.9886. doi:10.1039/b411352g. PMID 15534698.

[WuDovey2004-2] Wu, B.; Dovey, M.; Ng, M.H.; Tai, K.; Murdock, S.; Jeffreys, P.; Cox, S.; Essex, J.; Sansom, M.S.P. (2004). "A Web/Grid portal implementation of BioSimGrid: A biomolecular simulation database". International Conference on Information Technology: Coding and Computing, 2004. Proceedings. ITCC 2004. Vol. 2. pp. 50–54. CiteSeerX 10.1.1.108.6976. doi:10.1109/ITCC.2004.1286589. ISBN 978-0-7695-2108-4. S2CID 5729099.

[3] Ng, Muan Hong; Johnston, Steven; Murdock, Stuart; Wu, Bing; Tai, Kaihsu; Fangohr, Hans; Cox, Simon; Essex, Jonathan W.; Sansom, Mark; Jeffreys, Paul (2004). "Efficient data storage and analysis for generic biomolecular simulation data". pp. 443–450.

[4] Ng, Muan Hong; Johnston, Steven; Wu, Bing; Murdock, Stuart E.; Tai, Kaihsu; Fangohr, Hans; Cox, Simon J.; Essex, Jonathan W.; Sansom, Mark S.P.; Jeffreys, Paul (May 2006). "BioSimGrid: Grid-enabled biomolecular simulation data storage and analysis" (PDF). Future Generation Computer Systems. 22 (6): 657–664. doi:10.1016/j.future.2005.10.005.

[5] Murdock, Stuart (2007). "Extending Biosimgrid for Biomol Simulation". Grantome.

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