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Low Frequency of Microsatellites in the Avian Genome

Table 2.

Number of Avian Microsatellites in the GenBank 93 Database

Motif Size class (bp) Total
20–23 24–27 28–31 32–35 36–39 ⩾40
A 13 7 5 1 26
AGG 9 4 2 15
AC 4 2 1 1 2 10
CCG 5 3 1 9
AAAC 6 1 1 8
AAAT 4 1 1 2 8
AGC 4 1 1 6
AT 3 1 4
ACC 3 2 5
AAAG 2 1 3
AAG 1 2 3
AGGG 1 2 3
AAGG 1 1 2
AAT 1 1 2
ACAG 2 2
ACCT 1 1 2
ACGG 1 1 2
AG 1 1 2
C 2 2
AAC 1 1
ACG 1 1
ACGC 1 1
Mononucleotide 15 7 5 0 1 0 28
Dinucleotide 8 3 1 1 0 3 16
Trinucleotide 24 11 5 2 0 0 42
Tetranucleotide 19 5 2 0 0 5 31
 Total 66 26 13 3 1 8 117
  • One hundred eight of the repeats were from domestic chicken, four were from quail, (Coturnix coturnix), three were from ducks (Anas sp.), one was from turkey (Meleagris gallopavo), and one was from pigeon (Columba livia).

This Article

  1. Genome Res. 7: 471-482

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