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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 6.5k 1.9k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.1k 227

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 222 20

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 238 74

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 145 40

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 574 105

Repositories

Showing 10 of 85 repositories
  • LongiSeg Public
    MIC-DKFZ/LongiSeg’s past year of commit activity
    Python 11 Apache-2.0 0 1 0 Updated Apr 8, 2025
  • aorta-aneurysm-assessment Public
    MIC-DKFZ/aorta-aneurysm-assessment’s past year of commit activity
    Python 0 0 0 0 Updated Apr 8, 2025
  • LesionLocator Public

    LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.

    MIC-DKFZ/LesionLocator’s past year of commit activity
    Python 22 GPL-3.0 1 2 0 Updated Apr 8, 2025
  • nnssl Public
    MIC-DKFZ/nnssl’s past year of commit activity
    Python 1 0 0 0 Updated Apr 7, 2025
  • confly Public
    MIC-DKFZ/confly’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Apr 4, 2025
  • Longitudinal-Difference-Weighting Public

    Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting

    MIC-DKFZ/Longitudinal-Difference-Weighting’s past year of commit activity
    Python 5 Apache-2.0 0 0 0 Updated Apr 1, 2025
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 6,545 Apache-2.0 1,910 286 (1 issue needs help) 26 Updated Apr 1, 2025
  • napari_toolkit Public
    MIC-DKFZ/napari_toolkit’s past year of commit activity
    Python 3 Apache-2.0 2 0 0 Updated Mar 29, 2025
  • napari-labels Public
    MIC-DKFZ/napari-labels’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 28, 2025
  • napari-camera Public
    MIC-DKFZ/napari-camera’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 27, 2025
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