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  1. Gentrius_2023SM Gentrius_2023SM Public

    Data and Code for the manuscript "Identifying equally scoring trees in phylogenomics with incomplete data using Gentrius"

    Shell 2

  2. MatrixSimulator MatrixSimulator Public

    A simulator to generate 0-1 matrices, while controlling for various characteristics such as the number and spread of 0's across matrix, minimum and maximum numbers of 0/1 in each row/column, and ot…

    Python 1

  3. OlgaChern.github.io OlgaChern.github.io Public

    Personal website: https://olgachern.github.io/

    HTML

  4. scripts_evo_gen_brain_evo scripts_evo_gen_brain_evo Public

    scripts used for brain-evo project: data collection, data pre-processing, preparation of alignments, model selection, tree inference, computation of dN/dS, parsing and formatting output for downstr…

    Shell

  5. scripts_naive_terrace_analysis scripts_naive_terrace_analysis Public

    scripts to perform naive terrace analysis by analysing all trees in the corresponding tree space

    Shell

  6. nextflow_gentrius_sim nextflow_gentrius_sim Public

    Python