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@Ultimagen

Ultimagen

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  1. VariantCalling VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Python 8

  2. healthomics-workflows healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    WDL 6 1

  3. FREEC FREEC Public

    Forked from BoevaLab/FREEC

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 1 1

  4. test-lfs test-lfs Public

    test git lfs issues

  5. picard picard Public

    Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java

  6. gatk gatk Public

    Forked from broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Java

Repositories

Showing 10 of 18 repositories
  • VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Ultimagen/VariantCalling’s past year of commit activity
    Python 8 Apache-2.0 0 2 8 Updated Jul 18, 2024
  • FREEC Public Forked from BoevaLab/FREEC

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    Ultimagen/FREEC’s past year of commit activity
    C++ 1 47 0 0 Updated Jul 18, 2024
  • healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    Ultimagen/healthomics-workflows’s past year of commit activity
    WDL 6 1 0 0 Updated Jul 2, 2024
  • cn.mops Public Forked from bioinf-jku/cn.mops

    Fork of Bioconductor git repository for cn.mops. Contains UG-specific changes

    Ultimagen/cn.mops’s past year of commit activity
    R 0 4 0 2 Updated Jul 2, 2024
  • gatk Public Forked from broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Ultimagen/gatk’s past year of commit activity
    Java 0 586 0 3 Updated Jun 26, 2024
  • picard Public Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Ultimagen/picard’s past year of commit activity
    Java 0 MIT 368 0 0 Updated Jun 26, 2024
  • gridss Public Forked from PapenfussLab/gridss

    GRIDSS: the Genomic Rearrangement IDentification Software Suite

    Ultimagen/gridss’s past year of commit activity
    Java 0 73 0 0 Updated Jun 23, 2024
  • parascopy Public Forked from tprodanov/parascopy

    Copy number estimation and variant calling for duplicated genes using WGS.

    Ultimagen/parascopy’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Jun 9, 2024
  • wgbs_tools Public Forked from nloyfer/wgbs_tools

    tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

    Ultimagen/wgbs_tools’s past year of commit activity
    Python 0 35 0 0 Updated May 23, 2024
  • hmftools Public Forked from hartwigmedical/hmftools

    Various algorithms for analysing genomics data

    Ultimagen/hmftools’s past year of commit activity
    Java 0 GPL-3.0 56 0 0 Updated Apr 21, 2024
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