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@WhiteLabGenomics

WhiteLabs Genomics

Smart solutions for Gene Therapy
README.md

Welcome to the Whitelab Genomics github space

AI for genomic medicine



Welcome!

linkedin: whitelab-genomics/   github: oscar-defelice   email   website

  • 🧬 We are currently working on de-risking genomic medicine development!
  • 📫 How to reach us: write us an email or you can drop us a message on our social pages.

Popular repositories Loading

  1. TerraPipelines_BulkRNAseq TerraPipelines_BulkRNAseq Public

    Bulk RNAseq pre-processing pipeline

    Jupyter Notebook 1

  2. DemoGeneExpression DemoGeneExpression Public archive

    A proof of concept for simpler UIs in expert mode

    Julia

  3. python_action python_action Public

    Repo that contains the different steps to test and creating github actions for python code. The aim is to be a reference to the python developers of WhiteLabGenomics.

    Shell

  4. terraPipelines terraPipelines Public

    WDL

  5. genepy genepy Public

    Forked from broadinstitute/genepy

    Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

    Python

  6. dalmatian dalmatian Public

    Forked from getzlab/dalmatian

    dalmatian is a collection of high-level companion functions for Firecloud and FISS.

    Python 1

Repositories

Showing 10 of 14 repositories
  • CellBender Public Forked from broadinstitute/CellBender

    CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

    WhiteLabGenomics/CellBender’s past year of commit activity
    Python 0 BSD-3-Clause 55 0 0 Updated Sep 27, 2024
  • terraPipelines Public
    WhiteLabGenomics/terraPipelines’s past year of commit activity
    WDL 0 0 0 0 Updated Jun 21, 2024
  • AtlasStats Public

    Tool to assess data availability in WLG scAtlas.

    WhiteLabGenomics/AtlasStats’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 26, 2024
  • TerraPipelines_BulkRNAseq Public

    Bulk RNAseq pre-processing pipeline

    WhiteLabGenomics/TerraPipelines_BulkRNAseq’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 22, 2024
  • .github Public

    ✨special ✨ repository to add a README.md to GitHub profile.

    WhiteLabGenomics/.github’s past year of commit activity
    0 0 0 0 Updated Feb 20, 2024
  • Atlas-portal Public Forked from chanzuckerberg/single-cell-data-portal

    The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

    WhiteLabGenomics/Atlas-portal’s past year of commit activity
    TypeScript 0 MIT 14 0 0 Updated Nov 28, 2023
  • atlas-tools Public Forked from chanzuckerberg/cellxgene-census

    CZ CELLxGENE Discover Census

    WhiteLabGenomics/atlas-tools’s past year of commit activity
    Jupyter Notebook 0 MIT 22 0 0 Updated Nov 20, 2023
  • genepy Public Forked from broadinstitute/genepy

    Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

    WhiteLabGenomics/genepy’s past year of commit activity
    Python 0 Apache-2.0 8 0 1 Updated Oct 26, 2023
  • wlgget Public Forked from pachterlab/gget

    🧬 gget enables efficient querying of genomic reference databases. part of the metaAtlas

    WhiteLabGenomics/wlgget’s past year of commit activity
    Python 0 BSD-2-Clause 74 0 0 Updated Aug 16, 2023
  • single-cell-curation Public Forked from chanzuckerberg/single-cell-curation

    Code and documentation for the curation of cellxgene datasets

    WhiteLabGenomics/single-cell-curation’s past year of commit activity
    Python 0 MIT 24 0 0 Updated Jul 11, 2023
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