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Python based Wikidata framework for easy dataframe extraction

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andrewtavis/wikirepo

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    Python based Wikidata framework for easy dataframe extraction

    wikirepo is a Python package that provides a framework to easily source and leverage standardized Wikidata information. The goal is to create an intuitive interface so that Wikidata can function as a common read-write repository for public statistics.

    See the documentation for a full outline of the package including usage and available data.

    Contents

    Installation

    wikirepo can be downloaded from PyPI via pip or sourced directly from this repository:

    pip install wikirepo
    git clone https://github.com/andrewtavis/wikirepo.git
    cd wikirepo
    python setup.py install
    import wikirepo

    Data

    wikirepo's data structure is built around Wikidata.org. Human-readable access to Wikidata statistics is achieved through converting requests into Wikidata's Quantity IDs (QIDs) and Property IDs (PIDs), with the Python package wikidata serving as a basis for data loading and indexing. See the documentation for a structured overview of the currently available properties.

    Query Data

    wikirepo's main access function, wikirepo.data.query, returns a pandas.DataFrame of locations and property data across time.

    Each query needs the following inputs:

    • locations: the locations that data should be queried for
      • Strings are accepted for Earth, continents, and countries
      • Get all country names with wikirepo.data.incl_lctn_lbls(lctn_lvls='country')
      • The user can also pass Wikidata QIDs directly
    • depth: the geographic level of the given locations to query
      • A depth of 0 is the locations themselves
      • Greater depths correspond to lower geographic levels (states of countries, etc.)
      • A dictionary of locations is generated for lower depths (see second example below)
    • timespan: start and end datetime.date objects defining when data should come from
      • If not provided, then the most recent data will be retrieved with annotation for when it's from
    • interval: yearly, monthly, weekly, or daily as strings
    • Further arguments: the names of modules in wikirepo/data directories
      • These are passed to arguments corresponding to their directories
      • Data will be queried for these properties for the given locations, depth, timespan and interval, with results being merged as dataframe columns

    Queries are also able to access information in Wikidata sub-pages for locations. For example: if inflation rate is not found on the location's main page, then wikirepo checks the location's economic topic page as inflation_rate.py is found in wikirepo/data/economic (see Germany and economy of Germany).

    wikirepo further provides a unique dictionary class, EntitiesDict, that stores all loaded Wikidata entities during a query. This speeds up data retrieval, as entities are loaded once and then accessed in the EntitiesDict object for any other needed properties.

    Examples of wikirepo.data.query follow:

    Querying Information for Given Countries

    import wikirepo
    from wikirepo.data import wd_utils
    from datetime import date
    
    ents_dict = wd_utils.EntitiesDict()
    # Strings must match their Wikidata English page names
    countries = ["Germany", "United States of America", "People's Republic of China"]
    # countries = ["Q183", "Q30", "Q148"] # we could also pass QIDs
    # data.incl_lctn_lbls(lctn_lvls='country') # or all countries`
    depth = 0
    timespan = (date(2009, 1, 1), date(2010, 1, 1))
    interval = "yearly"
    
    df = wikirepo.data.query(
        ents_dict=ents_dict,
        locations=countries,
        depth=depth,
        timespan=timespan,
        interval=interval,
        climate_props=None,
        demographic_props=["population", "life_expectancy"],
        economic_props="median_income",
        electoral_poll_props=None,
        electoral_result_props=None,
        geographic_props=None,
        institutional_props="human_dev_idx",
        political_props="executive",
        misc_props=None,
        verbose=True,
    )
    
    col_order = [
        "location",
        "qid",
        "year",
        "executive",
        "population",
        "life_exp",
        "human_dev_idx",
        "median_income",
    ]
    df = df[col_order]
    
    df.head(6)
    location qid year executive population life_exp human_dev_idx median_income
    Germany Q183 2010 Angela Merkel 8.1752e+07 79.9878 0.921 33333
    Germany Q183 2009 Angela Merkel nan 79.8366 0.917 nan
    United States of America Q30 2010 Barack Obama 3.08746e+08 78.5415 0.914 43585
    United States of America Q30 2009 George W. Bush nan 78.3902 0.91 nan
    People's Republic of China Q148 2010 Wen Jiabao 1.35976e+09 75.236 0.706 nan
    People's Republic of China Q148 2009 Wen Jiabao nan 75.032 0.694 nan

    Querying Information for all US Counties

    # Note: >3000 regions, expect a 45 minute runtime
    import wikirepo
    from wikirepo.data import lctn_utils, wd_utils
    from datetime import date
    
    ents_dict = wd_utils.EntitiesDict()
    country = "United States of America"
    # country = "Q30" # we could also pass its QID
    depth = 2  # 2 for counties, 1 for states and territories
    sub_lctns = True  # for all
    # Only valid sub-locations given the timespan will be queried
    timespan = (date(2016, 1, 1), date(2018, 1, 1))
    interval = "yearly"
    
    us_counties_dict = lctn_utils.gen_lctns_dict(
        ents_dict=ents_dict,
        locations=country,
        depth=depth,
        sub_lctns=sub_lctns,
        timespan=timespan,
        interval=interval,
        verbose=True,
    )
    
    df = wikirepo.data.query(
        ents_dict=ents_dict,
        locations=us_counties_dict,
        depth=depth,
        timespan=timespan,
        interval=interval,
        climate_props=None,
        demographic_props="population",
        economic_props=None,
        electoral_poll_props=None,
        electoral_result_props=None,
        geographic_props="area",
        institutional_props="capital",
        political_props=None,
        misc_props=None,
        verbose=True,
    )
    
    df[df["population"].notnull()].head(6)
    location sub_lctn sub_sub_lctn qid year population area_km2 capital
    United States of America California Alameda County Q107146 2018 1.6602e+06 2127 Oakland
    United States of America California Contra Costa County Q108058 2018 1.14936e+06 2078 Martinez
    United States of America California Marin County Q108117 2018 263886 2145 San Rafael
    United States of America California Napa County Q108137 2018 141294 2042 Napa
    United States of America California San Mateo County Q108101 2018 774155 1919 Redwood City
    United States of America California Santa Clara County Q110739 2018 1.9566e+06 3377 San Jose

    Upload Data (WIP)

    wikirepo.data.upload will be the core of the eventual wikirepo upload feature. The goal is to record edits that a user makes to a previously queried or baseline dataframe such that these changes can then be pushed back to Wikidata. With the addition of Wikidata login credentials as a wikirepo feature (WIP), the unique information in the edited dataframe could then be uploaded to Wikidata for all to use.

    The same process used to query information from Wikidata could be reversed for the upload process. Dataframe columns could be linked to their corresponding Wikidata properties, whether the time qualifiers are a point in time or spans using start time and end time could be derived through the defined variables in the module header, and other necessary qualifiers for proper data indexing could also be included. Source information could also be added in corresponding columns to the given property edits.

    Pseudocode for how this process could function follows:

    In the first example, changes are made to a df.copy() of a queried dataframe. pandas is then used to compare the new and original dataframes after the user has added information that they have access to.

    import wikirepo
    from wikirepo.data import lctn_utils, wd_utils
    from datetime import date
    
    credentials = wd_utils.login()
    
    ents_dict = wd_utils.EntitiesDict()
    country = "Country Name"
    depth = 2
    sub_lctns = True
    timespan = (date(2000,1,1), date(2018,1,1))
    interval = 'yearly'
    
    lctns_dict = lctn_utils.gen_lctns_dict()
    
    df = wikirepo.data.query()
    df_copy = df.copy()
    
    # The user checks for NaNs and adds data
    
    df_edits = pd.concat([df, df_copy]).drop_duplicates(keep=False)
    
    wikirepo.data.upload(df_edits, credentials)

    In the next example data.data_utils.gen_base_df is used to create a dataframe with dimensions that match a time series that the user has access to. The data is then added to the column that corresponds to the property to which it should be added. Source information could further be added via a structured dictionary generated for the user.

    import wikirepo
    from wikirepo.data import data_utils, wd_utils
    from datetime import date
    
    credentials = wd_utils.login()
    
    locations = "Country Name"
    depth = 0
    # The user defines the time parameters based on their data
    timespan = (date(1995,1,2), date(2010,1,2)) # (first Monday, last Sunday)
    interval = 'weekly'
    
    base_df = data_utils.gen_base_df()
    base_df['data'] = data_for_matching_time_series
    
    source_data = wd_utils.gen_source_dict('Source Information')
    base_df['data_source'] = [source_data] * len(base_df)
    
    wikirepo.data.upload(base_df, credentials)

    Put simply: a full featured wikirepo.data.upload function would realize the potential of a single read-write repository for all public information.

    Maps (WIP)

    wikirepo/maps is a further goal of the project, as it combines wikirepo's focus on easy to access open source data and quick high level analytics.

    • Query Maps

    As in wikirepo.data.query, passing the locations, depth, timespan and interval arguments could access GeoJSON files stored on Wikidata, thus providing mapping files in parallel to the user's data. These files could then be leveraged using existing Python plotting libraries to provide detailed presentations of geographic analysis.

    • Upload Maps

    Similar to the potential of adding statistics through wikirepo.data.upload, GeoJSON map files could also be uploaded to Wikidata using appropriate arguments. The potential exists for a myriad of variable maps given locations, depth, timespan and interval information that would allow all wikirepo users to get the exact mapping file that they need for their given task.

    Examples

    wikirepo can be used as a foundation for countless projects, with its usefulness and practicality only improving as more properties are added and more data is uploaded to Wikidata.

    Current usage examples include:

    • Sample notebooks for the Python package poli-sci-kit show how to use wikirepo as a basis for political election and parliamentary appointment analysis, with those notebooks being found in the examples for poli-sci-kit or on Google Colab
    • Pull requests with other examples will gladly be accepted

    To-Do

    Please see the contribution guidelines if you are interested in contributing to this project. Work that is in progress or could be implemented includes:

    Expanding wikirepo

    • Creating an outline of the package's structure for the readme (see issue)

    • Integrating current Python tools with wikirepo structures for uploads to Wikidata

    • Adding a query of property descriptions to data.data_utils.incl_dir_idxs (see issue)

    • Adding multiprocessing support to the wikirepo.data.query process and data.lctn_utils.gen_lctns_dict

    • Potentially converting wikirepo.data.query and data.lctn_utils.gen_lctns_dict over to generated Wikidata SPARQL queries

    • Optimizing wikirepo.data.query:

      • Potentially converting EntitiesDict and LocationsDict to slotted object classes for memory savings
      • Deriving and optimizing other slow parts of the query process
    • Adding access to GeoJSON files for mapping via wikirepo.maps.query

    • Designing and adding GeoJSON files indexed by time properties to Wikidata

    • Creating, improving and sharing examples

    • Improving tests for greater code coverage

    • Improving code quality by refactoring large functions and checking conventions

    Expanding Wikidata

    The growth of wikirepo's database relies on that of Wikidata. Through data.wd_utils.dir_to_topic_page wikirepo can access properties on location sub-pages, thus allowing for statistics on any topic to be linked to. Beyond including entries for already existing properties (see this issue), the following are examples of property types that could be added:

    • Climate statistics could be added to data/climate

      • This would allow for easy modeling of global warming and its effects
      • Planning would be needed for whether lower intervals would be necessary, or just include daily averages
    • Those for electoral polling and results for locations

      • This would allow direct access to all needed election information in a single function call
    • A property that links political parties and their regions in data/political

      • For easy professional presentation of electoral results (ex: loading in party hex colors, abbreviations, and alignments)
    • data/demographic properties such as:

      • age, education, religious, and linguistic diversities across time
    • data/economic properties such as:

      • female workforce participation, workforce industry diversity, wealth diversity, and total working age population across time
    • Distinct properties for Freedom House and Press Freedom indexes, as well as other descriptive metrics

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