Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
Skip to content
@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

Pinned Loading

  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.6k 581

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 958 366

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 973 355

Repositories

Showing 10 of 1265 repositories
  • beast-beagle-cuda Public

    BEAST+BEAGLE compiled with NVIDIA CUDA

    broadinstitute/beast-beagle-cuda’s past year of commit activity
    Shell 10 MIT 2 1 1 Updated Jul 18, 2024
  • seqr-loading-pipelines Public

    hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

    broadinstitute/seqr-loading-pipelines’s past year of commit activity
    Python 22 MIT 20 16 (1 issue needs help) 2 Updated Jul 18, 2024
  • monorepo Public

    Compendium of tools for the Imaging Platform

    broadinstitute/monorepo’s past year of commit activity
    Python 6 0 8 2 Updated Jul 18, 2024
  • dig-aggregator-methods Public

    Monorepo of methods implemented for the Aggregator

    broadinstitute/dig-aggregator-methods’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 7 Updated Jul 18, 2024
  • juniper Public
    broadinstitute/juniper’s past year of commit activity
    Java 4 BSD-3-Clause 5 0 5 Updated Jul 18, 2024
  • gatk Public

    Official code repository for GATK versions 4 and up

    broadinstitute/gatk’s past year of commit activity
    Java 1,645 581 1,193 (8 issues need help) 138 Updated Jul 17, 2024
  • gatk-sv Public

    A structural variation pipeline for short-read sequencing

    broadinstitute/gatk-sv’s past year of commit activity
    Python 162 BSD-3-Clause 71 68 18 Updated Jul 17, 2024
  • cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    broadinstitute/cromwell’s past year of commit activity
    Scala 973 BSD-3-Clause 355 727 43 Updated Jul 17, 2024
  • data-registry-api Public
    broadinstitute/data-registry-api’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 0 Updated Jul 17, 2024
  • depmap_omics Public

    What you need to process the Quarterly DepMap-Omics releases from Terra

    broadinstitute/depmap_omics’s past year of commit activity
    HTML 103 22 2 5 Updated Jul 17, 2024
View all repositories

Top languages

Loading…