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@caravagnalab

Caravagna Lab

The Cancer Data Science Laboratory at the University of Trieste, Italy. PI Giulio Caravagna.

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  1. revolver revolver Public

    REVOLVER - Repeated Evolution in Cancer

    R 65 25

  2. mobster mobster Public

    Model-based subclonal deconvolution from bulk sequencing.

    HTML 33 8

  3. CNAqc CNAqc Public

    CNAqc - Copy Number Alteration (CNA) Quality Check package

    R 20 8

  4. TINC TINC Public

    Tumour-in-Normal Contamination assessment with evolutionary theory.

    R 5 2

  5. VIBER VIBER Public

    VIBER - Variational Binomial Mixtures

    HTML 2 2

Repositories

Showing 10 of 38 repositories
  • rRACES-examples Public
    caravagnalab/rRACES-examples’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 2, 2025
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    caravagnalab/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 5,221 0 0 Updated Apr 1, 2025
  • BMix Public

    Binomial and Beta-Binomial mixture models for counts data.

    caravagnalab/BMix’s past year of commit activity
    HTML 5 GPL-3.0 0 0 0 Updated Apr 1, 2025
  • MOBSTERm Public

    Multivariate subclonal deconvolution

    caravagnalab/MOBSTERm’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 1, 2025
  • tickTack Public

    Timing Inference for Copy number alterations: Tracking Alterations in Cancer Karyotypes

    caravagnalab/tickTack’s past year of commit activity
    R 0 0 0 0 Updated Mar 27, 2025
  • simbascule Public

    Package to generate synthetic data from the bascule generative model.

    caravagnalab/simbascule’s past year of commit activity
    R 1 0 0 0 Updated Mar 25, 2025
  • tumourevo Public Forked from nf-core/tumourevo

    Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

    caravagnalab/tumourevo’s past year of commit activity
    0 GPL-3.0 5 0 0 Updated Mar 24, 2025
  • bascule Public

    Detecting mutational signatures via bayesian inference and a reference catalog

    caravagnalab/bascule’s past year of commit activity
    R 1 GPL-3.0 1 1 0 Updated Mar 14, 2025
  • rRACES Public

    R wrapper for the RACES package

    caravagnalab/rRACES’s past year of commit activity
    C++ 2 GPL-3.0 1 8 0 Updated Mar 14, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    caravagnalab/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,453 0 0 Updated Mar 7, 2025
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