Brief Introduction:
- Open/Accept position on Scientist | Researcher | Specialist | System Administrator.
- Curriculum Vitae/Past Employers References | Scopus | ORCID | Web of Science.
- Extremely collaborative, Highly Communicative, approachable, motivated, task and solution oriented, time responsive, and initiative taker.
- I dont use AI for code writing and write at Linux community. This will help you understand real person.
- If you havent heard from / confirmed with me and believed anything false, it has nothing to do with me. If someone has said i like anyone/mylikes/mydislikes/association with anything, kindly ignore such people or go to them and dont approach me. They are wasting your time and that has nothing to do with me. I dont allow someone to make a decision for me. Dont waste my and others time.
Work Areas/Employment: Bioinformatics | Deep Learning | System Administration
- 2024- : Universitat Potsdam,Germany, where I self-learnt Julia, GO and Javascript. I benchmarked PacBioHifi genome analysis with complete web-based analysis invoking javascript/HTML-CSS, and coded several packages, gems in Python, Ruby, Julia, GO.
- 2021-2023: Machine and Deep learning, Devops and self-learnt Python, Web and Application development.
- 2020-2021: Finnish Museum of Natural History and the University of Helsinki, Finland. I managed the sequencing used the NextSeq methods, including sequencing library methods. I completed genome assembly, annotations, markers genes, ITS, and phylogenomics of over 500 different species.
- 2017-2021: Finnish Museum of Natural History and University of Helsinki, Finland, where I conducted bioinformatics and sequencing the genomes of lower plants Coleochaete orbicularis, Blasia pusilla, Chaetospiridium orbicularis, Polytrichum commune, Mallomonas, and Cryptomonas species, for which I did pacbio sequencing, assembly, annotations, organelle genomes and evolutionary/phylogenomic/comparative genomics approaches. Additionally, during that tenure, I worked for collaboration with the host organization such as Edinburgh UK, to analyse the genomics data for PAFTOL species and the chloroplast genomes of the Ambrosia clade from Norway.
- 2016-2017: University of Connecticut, USA, where I analyzed the Douglas fir genome from the genome annotation to the phylogenomics and identifying genes and evolution of importance.
- 2014–2016: University of Technology, Sydney, Australia, where I developed computational methods for seagrasses.
- 2011-2014: Fondazione Edmund Mach, Italy, where I developed and analyzed bioinformatics methods for nuclear and organelle genomes. I analyzed metagenomics data coming from fungal and bacterial both whole genome as well as 16S and ITS sequencing.
Developer Code Stack:
- All code and ideas concieved and written by me unless specified.
- Till 2024: C++, Bash, Awk, R, Python, Ruby, Julia, Javascript, GO.
- Current: Bash/Shell, Awk, Python, Julia, Javascript, GO
- Machine|Deep Learning: PyTorch, Tensorflow, XGBoost, Scikit-learn, Keras, LightGBM, Fastai.
- Package|API Development: Python, Julia, GO,FASTAPI. Documentation: Markdown, MkDocs, Quatro.
- System Analyst: Git,Terraform, Kubernetes, Grafana, LDAP, Systemd, Apptainer, Docker, Podman.
- Database: SQlite3, PostgresSQL, MongoDB.
- HPC: PBS, SLURM.
- Web Develpoment: Electron, Shiny/ShinyExpress(Python), Streamlit, Django, HUGO, Flask, Javascript
- OS|Code Editor|Terminal: RedHat(Fedora), NeoVim, Cursor, Wezterm, tMUX, Zellij.
- In case of golang, please see the last commit message for the final release.
- System Adminstration - Python | Python Packages | Slurm generator | Ruby | Ruby gems | Devopsutils | Ruby-template | Go Apptainer-devops | Fedora-devops | GO-LDAP | GO-Network | Network-analyzer | TCP-analyzer
- Bioinformatics - Python | TAIR Streamlit |Tairaccession| Metabolic-analyzer | Metabolic-json | Ontology-graphs | Pacbiohifi | Ruby Panacheextract | Protalign and Proteinmultialign | Pacbiohifi-analyzer Go block-estimate | Block-getter | alignment-proportion | Alignment-estimate | Phylogenomics-Tab | GO-metagenomics | Phylogenomics-filter | Alignment-merger | GO-graphics | GO-Pacbiohifi | GO-mapper | GO-Pacbiohifi-Visualization