-
damona Public
singularity environment manager (application to NGS and bioinformatics)
-
variant_calling Public
Forked from sequana/variant_callingPython BSD 3-Clause "New" or "Revised" License UpdatedFeb 28, 2025 -
bioservices Public
Access to Biological Web Services from Python.
-
sequana Public
Forked from sequana/sequanaSequana: a set of Snakemake NGS pipelines
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedFeb 27, 2025 -
colormap Public
Utilities to visualise and create matplotlib colormaps and various color codecs
-
spectrum Public
Spectral Analysis in Python
-
sequana_pipetools Public
Forked from sequana/sequana_pipetoolsA set of tools to help building or using sequana pipelines
Python UpdatedJan 22, 2025 -
easydev Public
Common utilities to ease the development of Python packages
-
versionix Public
Forked from sequana/versionixPython BSD 3-Clause "New" or "Revised" License UpdatedDec 3, 2024 -
mapper Public
Forked from sequana/mapperPipeline to map a set of FastQ files
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 22, 2024 -
fitter Public
Fit data to many distributions
-
fastqc Public
Forked from sequana/fastqcsequana pipeline to perform parallel fastqc and summarize results with multiqc plot
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 31, 2024 -
lora Public
Forked from sequana/loraRun assembler (Canu, flye, hifiasm) on a set of long read files
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 30, 2024 -
sequana-wrappers Public
Forked from sequana/sequana-wrappersThe Sequana Wrapper Repository is a collection of reusable wrappers used in Sequana Pipelines.
CAP CDS BSD 3-Clause "New" or "Revised" License UpdatedAug 29, 2024 -
rnaseq Public
Forked from sequana/rnaseqRNA-seq, QC and differential analysis pipeline
R BSD 3-Clause "New" or "Revised" License UpdatedAug 19, 2024 -
cokelaer.github.io Public
New home page
JavaScript BSD 3-Clause "New" or "Revised" License UpdatedJun 23, 2024 -
denovo Public
Forked from sequana/denovoDenovo Assembly from FASTQ files
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 25, 2024 -
sequanix Public
Forked from sequana/sequanixSequanix is a graphical user interface (GUI) that can be used to run Snakemake workflows.
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 20, 2024 -
demultiplex Public
Forked from sequana/demultiplexSequana demultiplexing pipeline
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 29, 2023 -
quality_control Public
Forked from sequana/quality_controlA quality control pipeline for illumina data set. This pipeline removes contaminants (e.g. Phix), performs fastqc, adapter cleaning and trimming and checks for contaminants
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2023 -
downsampling Public
Forked from sequana/downsamplingdown sample NGS data
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2023 -
nanomerge Public
Forked from sequana/nanomergePipeline utility to perform merge of barcoded nanopore runs
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 20, 2023 -
revcomp Public
Forked from sequana/revcompA simple utility to convert a bunch of input fastq files into their reverse complement
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 19, 2023 -
laa Public
Forked from sequana/laaPacbio amplicon, sequana, phylogeny, variant
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 19, 2023 -
sequana_bioconvert Public
Forked from sequana/bioconvertconvert files from one format to another using bioconvert
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 17, 2023 -
depletion Public
Forked from sequana/depletionDeplete Fastq files from human or other content
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 17, 2023 -
pyodide Public
Forked from pyodide/pyodidePyodide is a Python distribution for the browser and Node.js based on WebAssembly
Python Mozilla Public License 2.0 UpdatedDec 5, 2023 -
-
ribofinder Public
Forked from sequana/ribofinderWorkflow to find ribosomal feature in set of FastQ files
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 5, 2023 -
bioconvert Public
Forked from bioconvert/bioconvertBioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Python GNU General Public License v3.0 UpdatedJul 17, 2023