A modern, customizable and extensible browser in Emacs

A Bar/Panel for Hyprland with extensive customizability.

Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)

Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

An aDNA aware short-read mapper

tools for working with genome variation graphs

Optimal sequence-to-graph alignment with recombinations

pangenome from maximal blocks in an MSA

Hyprland is an independent, highly customizable, dynamic tiling Wayland compositor that doesn't sacrifice on its looks.

A blazing fast fetch program written in C

R package for querying the DrugBank database in batch locally

Automatically exported from code.google.com/p/macs

Computing matching statistics with compressed data structures

SLP encodings that support substring extraction

MONI: A Pangenomic Index for Finding MEMs

In depth study on point cloud classification using DNN

Source code and input data to reproduce the case studies presented in the TRaIT framework: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2795-4

Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Cancer Inference (PICNIC).

LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudin…

Viral Evolution ReconStructiOn (VERSO). The manuscript of the method is available at: https://www.cell.com/patterns/fulltext/S2666-3899(21)00022-2

Succinct Data Structure Library 2.0

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

Implementazione di un'automa cellulare in grado di simulare il comportamento del Physarum Polycephalum, per la risoluzione di problemi di path-finding.

Implementation of Positional Burrows-Wheeler Transform for genetic data