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1000-Genomes-Exome-Analysis Public
This repository contains a comprehensive collection of genomic data analysis projects, showcasing end-to-end workflows for critical bioinformatics tasks. From read alignment and variant calling to …
Jupyter Notebook UpdatedDec 20, 2024 -
Genotyping-Genome-Assembly Public
A project that performs genome assembly, quality assessment, and genotyping on paired-end read data. It utilizes the SKESA assembler for genome assembly, QUAST for quality assessment, and MLST for …
HTML UpdatedAug 15, 2024 -
Sequence-Assembly-Workflow Public
A Nextflow workflow which trims FASTA sequences and assembles them.
Nextflow UpdatedAug 15, 2024 -
Life-Satisfaction-Predictors Public
Analysis of the 2022 National Health Interview Survey data to identify the strongest predictors of life satisfaction in adults.
Jupyter Notebook UpdatedAug 15, 2024 -
A Machine Learning framework to estimate Protein Thermostability from Amino Acid sequences which uses Prot-BERT and Amino Acid Composition Feature Engineering to encode the sequences, and XGBoost a…
Python UpdatedAug 12, 2024 -
in-silico-PCR Public
MagnumOpus is a Python package designed to perform in-silico PCR (Polymerase Chain Reaction) on DNA sequences and align the resulting amplicons using the Needleman-Wunsch algorithm. This tool is us…
Python UpdatedAug 12, 2024 -
Microbial-Genomic-Analysis Public
A comprehensive microbial genomic analysis pipeline that includes quality control, gene prediction, annotation, and comparative genomic analysis for identifying and visualizing key genetic features…
Shell UpdatedAug 11, 2024 -
KritikalProject Public
An open-source coding assistant in Python that leverages a fine-tuned BERT model to recommend code components based on user search queries, providing an alternative to paid software like GitHub Cop…
Python UpdatedAug 11, 2024