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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 129

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 292 163

Repositories

Showing 10 of 89 repositories
  • forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    nextstrain/forecasts-ncov’s past year of commit activity
    Python 7 2 10 5 Updated Sep 28, 2024
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 2 0 2 0 Updated Sep 28, 2024
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 88 AGPL-3.0 49 74 (2 issues need help) 10 Updated Sep 27, 2024
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 42 MIT 19 23 9 Updated Sep 27, 2024
  • ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,353 MIT 403 72 26 Updated Sep 27, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 129 233 (1 issue needs help) 60 Updated Sep 26, 2024
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 19 9 Updated Sep 26, 2024
  • yellow-fever Public
    nextstrain/yellow-fever’s past year of commit activity
    Python 0 4 1 0 Updated Sep 26, 2024
  • nipah Public
    nextstrain/nipah’s past year of commit activity
    Python 0 0 1 0 Updated Sep 26, 2024
  • oropouche Public

    Oropouche Nextstrain build

    nextstrain/oropouche’s past year of commit activity
    Python 0 0 2 1 Updated Sep 26, 2024
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