Scipy 2016 sprint items

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Brian Helba edited this page Jul 16, 2016 · 5 revisions

Beginner

Detect and improve coverage with unit tests
Notify user that a required tool dependency is missing
Add duecredit support
Add a container-based alternative for command line or other tools
Export Nipype workflow in X {CWL, NextFlow} and execute with Y {Toil, NextFlow}
Force isolated execution and remove reliance on shared disks
update documentation to use responsive layouts
minimize dependencies

Intermediate

Testing framework for underlying tools
Analyze the execution graph to group and execute subgraphs by some criteria
- disconnected subgraphs
- chains of nodes
Query tools on provenance graphs (RDF+SPARQL with rdflib)
Create a Nipype workflow for scikit-learn cross-validation
Create an algorithm comparison workflow and output dashboard
Compare and contrast with capabilities with other workflow tools (e.g., Toil, Nextflow)
Add support for docker and/or singularity containers

Advanced

Engine refactoring (nipype engine 3.0)