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Structural Variants Assessment Based on Haplotype-resolved Assemblies

Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)

Breathing analysis with Polar H10 Heart Rate Monitor

Heart Rate Variability Training with the Polar H10 Monitor

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel

A structural variation pipeline for short-read sequencing

Finding CpG islands in genome sequences

Tandem repeat expansion detection or genotyping from long-read alignments

A modern Python package and dependency manager supporting the latest PEP standards

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

The complete sequence of a human genome

Data from the Human PanGenomics Project

Bioinformatics 101 tool for counting unique k-length substrings in DNA

WDL’s and Dockerfiles for assembly QC process

Catalog of genomic indexes freely available from public clouds

Copy number estimation and variant calling for duplicated genes using WGS.

The code from the WGBSsuite paper

The second version of the Kraken taxonomic sequence classification system

Kraken taxonomic sequence classification system

LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model

Program for aligning DNA sequences, a pairwise aligner.

Open source patternmaking software to democratize fashion.

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

Plot structural variant signals from many BAMs and CRAMs