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I'm a data scientist and researcher who develops software to make science more rigorous, transparent, and extensible.
My development includes contributions to:
- Manubot, a tool for writing scholarly manuscripts on GitHub.
- @hetio, software for hetnets in Python. See https://het.io/
- open licensing for academic research outputs
- data science tools. For example, I helped enable Pandas to read compressed files from URLs.
1 sponsor has funded dhimmel’s work.
Featured work
-
manubot/rootstock
Clone me to create your Manubot manuscript
HTML 453 -
hetio/hetionet
Hetionet: an integrative network of disease
HTML 265 -
cognoma/cognoma
Putting machine learning in the hands of cancer biologists
Jupyter Notebook 96 -
dhimmel/obonet
OBO-formatted ontologies → networkx (Python 3)
Python 136 -
hetio/hetnetpy
Hetnets in Python (relocated from dhimmel/hetio)
Python 93 -
dhimmel/hackjohn
Bot to monitor for southbound permit spaces on the John Muir Trail
Python 25